EnhancerDB
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Enhancers that regulate SSBP3-AS1[ENSG00000198711.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 54626849 54631535 enh49766 54703710 72175
Esophagus Bone Marrow (K562) Large Intestine
chr1 54631549 54636519 enh61845 54703710 67191
Esophagus
chr1 54689265 54697535 enh11863 54703710 6175
Astrocyte Placenta
chr1 54695028 54695502 vista1638 54703710 8208
VISTA
chr1 54696817 54697014 vista1639 54703710 6696
VISTA
chr1 54700132 54700688 vista1640 54703710 3022
VISTA
chr1 54709082 54722240 enh42965 54703710 5372
Prostate (PC-3) Brain (SK-N-SH) Bone (Osteoblast) Stomach Muscle (Myoblast) Muscle (Myotube) Heart
chr1 54713635 54713793 vista1641 54703710 9925
VISTA
chr1 54715450 54715803 vista1642 54703710 11740
VISTA
chr1 54723905 54731115 enh95367 54703710 20195
Ovary Stomach
chr1 54732705 54747095 enh11864 54703710 28995
Bone Marrow (K562) Astrocyte Adrenal Pancreas Uterus Kidney Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 54739679 54739787 vista1643 54703710 35969
VISTA
chr1 54744858 54745090 vista1644 54703710 41148
VISTA
chr1 54748925 54759595 enh11865 54703710 45215
Bone Marrow (K562) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Blood (T-cell) Astrocyte Stomach Muscle (A673) Placenta Uterus Pancreas Spleen Neural Stem Cells (H9) Thymus Heart
chr1 54749325 54749366 vista1645 54703710 45615
VISTA
chr1 54761072 54782679 enh11866 54703710 57362
Liver (HepG2) Brain (SK-N-SH) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
chr1 54765179 54765190 vista1646 54703710 61469
VISTA
chr1 54766230 54766370 vista1647 54703710 62520
VISTA
chr1 54771290 54771540 vista1648 54703710 67580
VISTA
chr1 54778588 54778715 vista1649 54703710 74878
VISTA
chr1 54786534 54810675 enh369 54703710 82824
Brain (SK-N-SH) Prostate (RWPE1) Stomach Muscle (A673) Uterus Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Heart
Transcript facotrs that regulate SSBP3-AS1[ENSG00000198711.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 54700108 54700583 TCF7L2 GTRD no Colon (HCT116) 54703710 3127 107804415
chr1 54700154 54700169 RUNX2 JASPAR yes 54703710 3541 118292141
chr1 54700163 54700168 SP1 TRANSFAC yes 54703710 3542 118292142
chr1 54700167 54700173 PEA3 TRANSFAC yes 54703710 3537 118292143
chr1 54700186 54700207 MAFG JASPAR yes 54703710 3503 118292144
chr1 54700196 54700215 PAX5 JASPAR yes 54703710 3495 118292145
chr1 54700199 54700216 PAX1 JASPAR yes 54703710 3494 118292146
chr1 54700199 54700216 PAX9 JASPAR yes 54703710 3494 118292147
chr1 54700216 54700227 NFE2L2 JASPAR yes 54703710 3483 118292148
chr1 54700233 54700253 PPARG JASPAR yes 54703710 3457 118292149
chr1 54700234 54700254 PPARG JASPAR yes 54703710 3456 118292150
chr1 54700236 54700249 SMAD2 JASPAR yes 54703710 3461 118292151
chr1 54700250 54700254 NFE TRANSFAC yes 54703710 3456 118292152
chr1 54700250 54700255 GATA1 TRANSFAC yes 54703710 3455 118292153
chr1 54700250 54700256 GATA3 JASPAR yes 54703710 3454 118292154
chr1 54700255 54700263 FOXO3 JASPAR yes 54703710 3447 118292155
chr1 54700262 54700274 FOXI1 JASPAR yes 54703710 3436 118292156
chr1 54700266 54700278 FOXI1 JASPAR yes 54703710 3432 118292157
chr1 54700270 54700282 FOXI1 JASPAR yes 54703710 3428 118292158
chr1 54700279 54700290 PHOX2A JASPAR yes 54703710 3420 118292159
chr1 54700279 54700290 PROP1 JASPAR yes 54703710 3420 118292160
chr1 54700282 54700292 GSC2 JASPAR yes 54703710 3418 118292161
chr1 54700283 54700291 OTX1 JASPAR yes 54703710 3419 118292162
chr1 54700283 54700291 OTX2 JASPAR yes 54703710 3419 118292163
chr1 54700283 54700292 PITX3 JASPAR yes 54703710 3418 118292164
chr1 54700293 54700305 FOXI1 JASPAR yes 54703710 3405 118292165
chr1 54700300 54700304 YY1 TRANSFAC yes 54703710 3406 118292166
chr1 54700302 54700553 ZNF274 GTRD no Liver (HepG2) 54703710 3157 107804416
chr1 54700303 54700318 HNF1A JASPAR yes 54703710 3392 118292167
chr1 54700305 54700317 HNF1B JASPAR yes 54703710 3393 118292168
chr1 54700307 54700319 POU2F1 JASPAR yes 54703710 3391 118292169
chr1 54700307 54700320 POU3F3 JASPAR yes 54703710 3390 118292170
chr1 54700307 54700321 POU1F1 JASPAR yes 54703710 3389 118292171
chr1 54700307 54700322 MEF2C JASPAR yes 54703710 3388 118292172
chr1 54700308 54700319 FOXB1 JASPAR yes 54703710 3391 118292173
chr1 54700308 54700320 POU3F1 JASPAR yes 54703710 3390 118292174
chr1 54700308 54700321 POU3F3 JASPAR yes 54703710 3389 118292175
chr1 54700309 54700313 YY1 TRANSFAC yes 54703710 3397 118292176
chr1 54700309 54700318 POU5F1B JASPAR yes 54703710 3392 118292177
chr1 54700309 54700320 FOXB1 JASPAR yes 54703710 3390 118292178
chr1 54700309 54700321 POU2F1 JASPAR yes 54703710 3389 118292179
chr1 54700310 54700319 POU5F1B JASPAR yes 54703710 3391 118292180
chr1 54700312 54700326 POU4F1 JASPAR yes 54703710 3384 118292181
chr1 54700312 54700328 POU4F2 JASPAR yes 54703710 3382 118292182
chr1 54700312 54700328 POU4F3 JASPAR yes 54703710 3382 118292183
chr1 54700317 54700323 TBP TRANSFAC yes 54703710 3387 118292184
chr1 54700318 54700334 SOX8 JASPAR yes 54703710 3376 118292185
chr1 54700319 54700334 SOX21 JASPAR yes 54703710 3376 118292186
chr1 54700322 54700331 SRY JASPAR yes 54703710 3379 118292187
chr1 54700324 54700327 MYB TRANSFAC yes 54703710 3383 118292188
chr1 54700345 54700356 DMRT3 JASPAR yes 54703710 3354 118292189
chr1 54700347 54700352 GATA2 JASPAR yes 54703710 3358 118292190
chr1 54700352 54700356 YY1 TRANSFAC yes 54703710 3354 118292191
chr1 54700354 54700372 NR3C1 JASPAR yes 54703710 3338 118292192
chr1 54700355 54700370 AR JASPAR yes 54703710 3340 118292193
chr1 54700355 54700372 NR3C1 JASPAR yes 54703710 3338 118292194
chr1 54700355 54700372 NR3C2 JASPAR yes 54703710 3338 118292195
chr1 54700384 54700399 HNF4A JASPAR yes 54703710 3311 118292196
chr1 54700394 54700409 TFAP2A JASPAR yes 54703710 3301 118292197
chr1 54700396 54700411 TFAP2C JASPAR yes 54703710 3299 118292198
chr1 54700397 54700408 TFAP2A JASPAR yes 54703710 3302 118292199
chr1 54700407 54700418 CDX2 JASPAR yes 54703710 3292 118292200
chr1 54700433 54700437 TEAD2 TRANSFAC yes 54703710 3273 118292201
chr1 54700433 54700438 TBP TRANSFAC yes 54703710 3272 118292202
chr1 54700433 54700439 TFIID TRANSFAC yes 54703710 3271 118292203
chr1 54700435 54700450 FOXP1 JASPAR yes 54703710 3260 118292204
chr1 54700435 54700456 IRF1 JASPAR yes 54703710 3254 118292205
chr1 54700436 54700451 FOXP1 JASPAR yes 54703710 3259 118292206
chr1 54700436 54700457 IRF1 JASPAR yes 54703710 3253 118292207
chr1 54700437 54700452 FOXP1 JASPAR yes 54703710 3258 118292208
chr1 54700437 54700458 IRF1 JASPAR yes 54703710 3252 118292209
chr1 54700438 54700453 FOXP1 JASPAR yes 54703710 3257 118292210
chr1 54700439 54700454 FOXP1 JASPAR yes 54703710 3256 118292211
chr1 54700439 54700460 IRF1 JASPAR yes 54703710 3250 118292212
chr1 54700440 54700455 FOXP1 JASPAR yes 54703710 3255 118292213
chr1 54700442 54700457 FOXP1 JASPAR yes 54703710 3253 118292214
chr1 54700443 54700458 STAT2 JASPAR yes 54703710 3252 118292215
chr1 54700466 54700477 NFE2L2 JASPAR yes 54703710 3233 118292216
chr1 54700470 54700474 NFE TRANSFAC yes 54703710 3236 118292217
chr1 54700541 54700552 E2F6 JASPAR yes 54703710 3158 118292218
chr1 54700542 54700553 E2F1 JASPAR yes 54703710 3157 118292219
chr1 54700545 54700559 PLAG1 JASPAR yes 54703710 3151 118292220
chr1 54700656 54700660 YY1 TRANSFAC yes 54703710 3050 118292221
chr1 54700669 54700684 FOXA1 JASPAR yes 54703710 3026 118292222
chr1 54700670 54700685 FOXP1 JASPAR yes 54703710 3025 118292223
chr1 54700671 54700682 FOXP2 JASPAR yes 54703710 3028 118292224
chr1 54700671 54700683 FOXC2 JASPAR yes 54703710 3027 118292225
chr1 54700673 54700684 FOXA1 JASPAR yes 54703710 3026 118292226
chr1 54700673 54700684 FOXH1 JASPAR yes 54703710 3026 118292227
chr1 54700679 54700685 TCF1 TRANSFAC yes 54703710 3025 118292228
chr1 54700679 54700686 TCF4 TRANSFAC yes 54703710 3024 118292229
SNPs associated with SSBP3-AS1[ENSG00000198711.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 54725573 rs148541431 G A,T 20837 Esophagus 0.0809243 318595
chr1 54043110 rs4634849 C T 660600 Esophagus 0.163552 315469
chr1 54331763 rs1883453 A G 371947 Heart 0.2491 316970
chr1 54724246 rs3766442 T C 19510 Heart 0.0729718 318575
chr1 54366599 rs4927043 A G 337111 Adrenal 0.197564 317230
Details of SSBP3-AS1[ENSG00000198711.4]
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Genomic Location chr1:54703710-54704736[+]
TSS 54703710
Gene Name SSBP3-AS1
Ensembl ID ENSG00000198711.4
ENTREZID 619518
Uniprot
Protein Name
Putative uncharacterized protein SSBP3-AS1
Expression levels of SSBP3-AS1[ENSG00000198711.4]
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