EnhancerDB
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Enhancers that regulate RP13-279N23.2[ENSG00000255275.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 19138867 19149495 enh74159 19247615 98120
Muscle (Myoblast) Muscle (A673)
chr1 19155265 19159415 enh111361 19247615 88200
Brain (SK-N-MC)
chr1 19190435 19190769 vista591 19247615 56846
VISTA
chr1 19206751 19211749 enh102367 19247615 35866
Bone (Osteoblast)
chr1 19215365 19228223 enh11564 19247615 19392
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Esophagus Placenta Muscle (Myotube)
chr1 19237665 19243115 enh11565 19247615 4500
Stomach Placenta Heart
chr1 19248887 19249092 vista592 19247615 1272
VISTA
chr1 19252691 19280920 enh11566 19247615 5076
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19253034 19253391 vista593 19247615 5419
VISTA
chr1 19264079 19264209 vista594 19247615 16464
VISTA
chr1 19271920 19272097 vista595 19247615 24305
VISTA
chr1 19274997 19275345 vista596 19247615 27382
VISTA
chr1 19276270 19276542 vista597 19247615 28655
VISTA
chr1 19277155 19277462 vista598 19247615 29540
VISTA
chr1 19278388 19278892 vista599 19247615 30773
VISTA
chr1 19280139 19280583 vista600 19247615 32524
VISTA
chr1 19281204 19281307 vista601 19247615 33589
VISTA
chr1 19283819 19283997 vista602 19247615 36204
VISTA
chr1 19286689 19294555 enh11567 19247615 39074
Esophagus Astrocyte Placenta Lung (PC-9)
chr1 19295345 19301317 enh78968 19247615 47730
Prostate (PC-3) Prostate (RWPE1)
chr1 19312085 19318135 enh74160 19247615 64470
Pancreas Muscle (A673)
chr1 19322701 19342495 enh11568 19247615 75086
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 19324821 19325090 vista603 19247615 77206
VISTA
chr1 19333976 19334220 vista604 19247615 86361
VISTA
chr1 19336477 19336714 vista605 19247615 88862
VISTA
chr1 19337577 19337942 vista606 19247615 89962
VISTA
Transcript facotrs that regulate RP13-279N23.2[ENSG00000255275.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 19242631 19242643 FOXI1 JASPAR yes 19247615 4972 27161769
chr1 19242643 19242656 ZBTB18 JASPAR yes 19247615 4959 27161770
chr1 19242681 19242701 TP53 JASPAR yes 19247615 4914 27161771
chr1 19242687 19242707 TP53 JASPAR yes 19247615 4908 27161772
chr1 19242712 19242720 SP1 TRANSFAC yes 19247615 4895 27161773
chr1 19242722 19242727 GATA1 TRANSFAC yes 19247615 4888 27161774
chr1 19242731 19242735 LFA1 TRANSFAC yes 19247615 4880 27161775
chr1 19242742 19242752 SP1 JASPAR yes 19247615 4863 27161776
chr1 19242764 19242770 PEA3 TRANSFAC yes 19247615 4845 27161777
chr1 19242777 19242798 ZNF263 JASPAR yes 19247615 4817 27161778
chr1 19242778 19242783 ETS2 TRANSFAC yes 19247615 4832 27161779
chr1 19242804 19242819 AR JASPAR yes 19247615 4796 27161780
chr1 19242839 19242850 NRF1 JASPAR yes 19247615 4765 27161781
chr1 19242843 19242847 NFE TRANSFAC yes 19247615 4768 27161782
chr1 19242854 19242866 NHLH1 JASPAR yes 19247615 4749 27161783
chr1 19242855 19242865 NHLH1 JASPAR yes 19247615 4750 27161784
chr1 19242862 19242868 YY1 JASPAR yes 19247615 4747 27161785
chr1 19242872 19242880 MEIS2 JASPAR yes 19247615 4735 27161786
chr1 19242872 19242880 MEIS3 JASPAR yes 19247615 4735 27161787
chr1 19242873 19242877 NFE TRANSFAC yes 19247615 4738 27161788
chr1 19242873 19242880 MEIS1 JASPAR yes 19247615 4735 27161789
chr1 19242880 19242895 TFAP2A JASPAR yes 19247615 4720 27161790
chr1 19242880 19242895 TFAP2C JASPAR yes 19247615 4720 27161791
chr1 19242883 19242894 TFAP2A JASPAR yes 19247615 4721 27161792
chr1 19242883 19242894 TFAP2B JASPAR yes 19247615 4721 27161793
chr1 19242883 19242894 TFAP2C JASPAR yes 19247615 4721 27161794
chr1 19242884 19242893 TFAP2A JASPAR yes 19247615 4722 27161795
chr1 19242887 19242905 MAFF JASPAR yes 19247615 4710 27161796
chr1 19242889 19242908 PAX5 JASPAR yes 19247615 4707 27161797
chr1 19242939 19242950 NFKB1 JASPAR yes 19247615 4665 27161798
chr1 19242965 19242976 BATF JASPAR yes 19247615 4639 27161799
chr1 19242991 19243001 TBR1 JASPAR yes 19247615 4614 27161800
chr1 19243002 19243023 LUN1 TRANSFAC yes 19247615 4592 27161801
chr1 19243042 19243049 JUN TRANSFAC yes 19247615 4566 27161802
chr1 19243048 19243058 TEAD4 JASPAR yes 19247615 4557 27161803
chr1 19243068 19243072 LFA1 TRANSFAC yes 19247615 4543 27161804
chr1 19243086 19243090 NFE TRANSFAC yes 19247615 4525 27161805
chr1 19248804 19249248 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 19247615 1189 107802284
chr1 19248895 19248899 NFE TRANSFAC yes 19247615 1280 118242440
chr1 19248905 19248920 MEF2C JASPAR yes 19247615 1290 118242441
chr1 19248906 19248921 MEF2A JASPAR yes 19247615 1291 118242442
chr1 19248907 19248919 MEF2A JASPAR yes 19247615 1292 118242443
chr1 19248907 19248919 MEF2B JASPAR yes 19247615 1292 118242444
chr1 19248907 19248919 MEF2D JASPAR yes 19247615 1292 118242445
chr1 19248908 19248918 MEF2A JASPAR yes 19247615 1293 118242446
chr1 19248909 19248923 RORA JASPAR yes 19247615 1294 118242447
chr1 19248915 19248936 ZNF263 JASPAR yes 19247615 1300 118242448
chr1 19248923 19248944 ZNF263 JASPAR yes 19247615 1308 118242449
chr1 19248925 19248931 MAZ TRANSFAC yes 19247615 1310 118242450
chr1 19248925 19248936 E2F6 JASPAR yes 19247615 1310 118242451
chr1 19248927 19248935 SP1 TRANSFAC yes 19247615 1312 118242452
chr1 19248927 19248937 SP1 JASPAR yes 19247615 1312 118242453
chr1 19248929 19248935 MAZ TRANSFAC yes 19247615 1314 118242454
chr1 19248945 19248956 NFIL3 JASPAR yes 19247615 1330 118242455
chr1 19248945 19248959 ATF7 JASPAR yes 19247615 1330 118242456
chr1 19248945 19248959 BATF3 JASPAR yes 19247615 1330 118242457
chr1 19248945 19248959 CREB3 JASPAR yes 19247615 1330 118242458
chr1 19248946 19248958 DBP JASPAR yes 19247615 1331 118242459
chr1 19248946 19248958 HLF JASPAR yes 19247615 1331 118242460
chr1 19248946 19248958 JDP2 JASPAR yes 19247615 1331 118242461
chr1 19248946 19248958 TEF JASPAR yes 19247615 1331 118242462
chr1 19248946 19248959 ATF4 JASPAR yes 19247615 1331 118242463
chr1 19248946 19248961 JUND JASPAR yes 19247615 1331 118242464
chr1 19248947 19248960 JUN JASPAR yes 19247615 1332 118242465
chr1 19248948 19248955 JUN TRANSFAC yes 19247615 1333 118242466
chr1 19248948 19248956 CREB1 JASPAR yes 19247615 1333 118242467
chr1 19248948 19248956 GMEB2 JASPAR yes 19247615 1333 118242468
chr1 19248949 19248961 CREB1 JASPAR yes 19247615 1334 118242469
chr1 19248950 19248955 ATF1 TRANSFAC yes 19247615 1335 118242470
chr1 19248964 19248972 FOXO3 JASPAR yes 19247615 1349 118242471
chr1 19248975 19248989 STAT1 JASPAR yes 19247615 1360 118242472
chr1 19248981 19248986 GATA2 JASPAR yes 19247615 1366 118242473
chr1 19248987 19248998 FOXA1 JASPAR yes 19247615 1372 118242474
chr1 19249000 19249007 SPIB JASPAR yes 19247615 1385 118242475
chr1 19249003 19249014 NFKB1 JASPAR yes 19247615 1388 118242476
chr1 19249059 19249080 ZNF263 JASPAR yes 19247615 1444 118242477
chr1 19249060 19249075 PRDM1 JASPAR yes 19247615 1445 118242478
chr1 19249065 19249076 E2F6 JASPAR yes 19247615 1450 118242479
chr1 19249065 19249086 ZNF263 JASPAR yes 19247615 1450 118242480
chr1 19249066 19249087 ZNF263 JASPAR yes 19247615 1451 118242481
chr1 19249067 19249088 ZNF263 JASPAR yes 19247615 1452 118242482
chr1 19249068 19249089 ZNF263 JASPAR yes 19247615 1453 118242483
chr1 19250131 19253630 ZNF274 GTRD no Bone Marrow (K562) 19247615 2516 107802285
SNPs associated with RP13-279N23.2[ENSG00000255275.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of RP13-279N23.2[ENSG00000255275.3]
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Genomic Location chr1:19175767-19247615[-]
TSS 19247615
Gene Name RP13-279N23.2
Ensembl ID ENSG00000255275.3
ENTREZID
Uniprot
Protein Name
Expression levels of RP13-279N23.2[ENSG00000255275.3]
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