EnhancerDB
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Enhancers that regulate CDK5RAP3[ENSG00000108465.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 45938065 45965315 enh17194 46045176 79861
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
chr17 45953013 45953226 vista24995 46045176 91950
VISTA
chr17 45975613 45985635 enh32219 46045176 59541
Liver (HepG2) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr17 45980057 45980402 vista24996 46045176 64774
VISTA
chr17 45983662 45984115 vista24997 46045176 61061
VISTA
chr17 46024145 46028875 enh92733 46045176 16301
Liver (HepG2)
chr17 46034209 46034446 vista24998 46045176 10730
VISTA
chr17 46043736 46043949 vista24999 46045176 1227
VISTA
chr17 46058151 46084696 enh4448 46045176 12975
Liver Astrocyte Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr17 46072548 46072940 vista25000 46045176 27372
VISTA
chr17 46073519 46073818 vista25001 46045176 28343
VISTA
chr17 46078613 46078939 vista25002 46045176 33437
VISTA
chr17 46079914 46080281 vista25003 46045176 34738
VISTA
chr17 46080436 46080890 vista25004 46045176 35260
VISTA
chr17 46083704 46083942 vista25005 46045176 38528
VISTA
chr17 46086719 46098055 enh4449 46045176 41543
Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Ovary Bone (Osteoblast) Blood (GM12878) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Spleen Stomach
chr17 46089554 46089940 vista25006 46045176 44378
VISTA
chr17 46091429 46091644 vista25007 46045176 46253
VISTA
chr17 46091721 46092069 vista25008 46045176 46545
VISTA
chr17 46098785 46103435 enh4450 46045176 53609
Placenta Uterus Blood (T-cell) Blood (Karpas-422)
chr17 46101351 46101579 vista25009 46045176 56175
VISTA
chr17 46102426 46102830 vista25010 46045176 57250
VISTA
chr17 46123420 46131315 enh4451 46045176 78244
Placenta Blood (Karpas-422)
chr17 46128998 46130037 vista698 46045176 83822
VISTA
chr17 46140085 46147379 enh62621 46045176 94909
Esophagus Liver (HepG2) Neural Stem Cells (H9)
Transcript facotrs that regulate CDK5RAP3[ENSG00000108465.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 46042786 46045534 ZBTB33 GTRD no Lung (A549) 46045176 358 108267580
chr17 46043356 46045983 ZBTB33 GTRD no Lung (A549) 46045176 807 108267581
chr17 46043389 46044910 ZBTB33 GTRD no Lung (A549) 46045176 266 108267582
chr17 46043443 46045177 ZBTB33 GTRD no Lung (A549) 46045176 1 108267583
chr17 46043456 46043932 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 46045176 1244 108267584
chr17 46043548 46045284 ZBTB33 GTRD no Lung (A549) 46045176 108 108267585
chr17 46043593 46043883 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 46045176 1293 108267586
chr17 46043599 46045385 ZBTB33 GTRD no Lung (A549) 46045176 209 108267587
chr17 46043641 46043865 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 46045176 1311 108267588
chr17 46043655 46045756 ZBTB33 GTRD no Lung (A549) 46045176 580 108267589
chr17 46043681 46043782 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 46045176 1394 108267590
chr17 46043716 46044749 ZNF274 GTRD no Bone Marrow (K562) 46045176 427 108267591
chr17 46043720 46045225 ZBTB33 GTRD no Lung (A549) 46045176 49 108267592
chr17 46043725 46045169 ZNF274 GTRD no Cervix (HeLa-S3) 46045176 7 108267593
chr17 46043732 46045080 ZNF274 GTRD no Bone Marrow (K562) 46045176 96 108267594
chr17 46043736 46043750 NR2F1 JASPAR yes 46045176 1426 21248945
chr17 46043736 46043751 HNF4G JASPAR yes 46045176 1425 21248946
chr17 46043750 46043754 LFA1 TRANSFAC yes 46045176 1422 21248947
chr17 46043756 46043769 TFAP2B JASPAR yes 46045176 1407 21248948
chr17 46043763 46043778 NR2C2 JASPAR yes 46045176 1398 21248949
chr17 46043766 46043771 SP1 TRANSFAC yes 46045176 1405 21248950
chr17 46043770 46045411 ZBTB33 GTRD no Lung (A549) 46045176 235 108267595
chr17 46043780 46043793 SMAD2 JASPAR yes 46045176 1383 21248951
chr17 46043785 46043800 RFX5 JASPAR yes 46045176 1376 21248952
chr17 46043797 46043802 TFAP2A TRANSFAC yes 46045176 1374 21248953
chr17 46043797 46043803 MZF1 JASPAR yes 46045176 1373 21248954
chr17 46043816 46043830 EBF1 JASPAR yes 46045176 1346 21248955
chr17 46043817 46043828 EBF1 JASPAR yes 46045176 1348 21248956
chr17 46043822 46043835 ELF1 JASPAR yes 46045176 1341 21248957
chr17 46043825 46043831 PEA3 TRANSFAC yes 46045176 1345 21248958
chr17 46043837 46044753 ZNF274 GTRD no Bone Marrow (K562) 46045176 423 108267596
chr17 46043845 46043860 RFX5 JASPAR yes 46045176 1316 21248959
chr17 46043859 46045170 ZBTB33 GTRD no Lung (A549) 46045176 6 108267597
chr17 46043862 46045039 ZNF274 GTRD no Liver (HepG2) 46045176 137 108267598
chr17 46043874 46043895 ZNF263 JASPAR yes 46045176 1281 21248960
chr17 46043875 46044996 ZBTB33 GTRD no Brain (SK-N-SH) 46045176 180 108267599
chr17 46043887 46045098 ZNF274 GTRD no Bone Marrow (K562) 46045176 78 108267600
chr17 46043902 46044918 ZBTB33 GTRD no Lung (A549) 46045176 258 108267601
chr17 46043907 46043919 TEAD1 JASPAR yes 46045176 1257 21248961
chr17 46043911 46045070 ZNF274 GTRD no Liver (HepG2) 46045176 106 108267602
chr17 46043925 46044958 ZBTB33 GTRD no Brain (SK-N-SH) 46045176 218 108267603
chr17 46043937 46044752 ZNF274 GTRD no Liver (HepG2) 46045176 424 108267604
chr17 46043947 46046306 ZBTB33 GTRD no Lung (A549) 46045176 1130 108267605
chr17 46043948 46044910 ZNF274 GTRD no Blood (GM12878) 46045176 266 108267606
SNPs associated with CDK5RAP3[ENSG00000108465.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 46045495 rs4794333 T C 0 Esophagus 1.66714e-13 4906983
chr17 46045495 rs4794333 T C 0 Esophagus 6.40495e-05 4906983
chr17 46045495 rs4794333 T C 0 Heart 1.31245e-07 4906983
chr17 46044446 rs113962925 C T 730 Pancreas 0.0192345 4906975
chr17 46045495 rs4794333 T C 0 Breast 6.81169e-09 4906983
chr17 46072665 rs2597166 G A 13525 Spleen 0.0525658 4907205
chr17 45308053 rs59400833 A G 737123 Ovary 0.281023 4903592
chr17 46045495 rs4794333 T C 0 Uterus 0.29483 4906983
chr17 46048412 rs2285860 G A,C,T 0 Liver 0.00591422 4906998
chr17 46045495 rs4794333 T C 0 Lung 5.34549e-08 4906983
chr17 46373182 rs74631399 C T 314042 Stomach 0.0921742 4909084
chr17 46529501 rs12942428 T C 470361 Adrenal 0.00541327 4909597
Details of CDK5RAP3[ENSG00000108465.10]
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Genomic Location chr17:46045176-46059140[+]
TSS 46045176
Gene Name CDK5RAP3
Ensembl ID ENSG00000108465.10
ENTREZID 80279
Uniprot
Q96JB5
Protein Name
CDK5 regulatory subunit-associated protein 3
Expression levels of CDK5RAP3[ENSG00000108465.10]
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