EnhancerDB
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Enhancers that regulate GALNT2[ENSG00000143641.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 230106505 230110655 enh90776 230193536 82881
Bone Marrow (K562)
chr1 230113845 230117995 enh95988 230193536 75541
Epithelial (MCF-7)
chr1 230129945 230140438 enh64203 230193536 53098
Ovary Stomach Uterus Pancreas Neural Stem Cells (H9) Heart
chr1 230146605 230150755 enh102913 230193536 42781
Liver
chr1 230172725 230177250 enh74495 230193536 16286
Muscle (A673)
chr1 230180985 230185135 enh108411 230193536 8401
Lung (PC-9)
chr1 230203175 230225395 enh12769 230193536 9639
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 230203814 230204638 vista5485 230193536 10278
VISTA
chr1 230212552 230213069 vista5486 230193536 19016
VISTA
chr1 230220164 230220401 vista5487 230193536 26628
VISTA
chr1 230220475 230220731 vista5488 230193536 26939
VISTA
chr1 230237385 230313644 enh12770 230193536 43849
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 230240540 230240902 vista5489 230193536 47004
VISTA
chr1 230241590 230241986 vista5490 230193536 48054
VISTA
chr1 230248068 230248475 vista5491 230193536 54532
VISTA
chr1 230249347 230250007 vista5492 230193536 55811
VISTA
chr1 230258907 230259286 vista5493 230193536 65371
VISTA
chr1 230279464 230279771 vista5494 230193536 85928
VISTA
chr1 230280348 230284066 vista144 230193536 86812
VISTA
chr1 230282048 230282189 vista5495 230193536 88512
VISTA
chr1 230289705 230290142 vista5496 230193536 96169
VISTA
Transcript facotrs that regulate GALNT2[ENSG00000143641.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with GALNT2[ENSG00000143641.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 230360733 rs4846846 A C,G 0 Esophagus 1.87412e-28 1016399
chr1 230294648 rs6541298 A G 0 Esophagus 0.237128 1015533
chr1 230221783 rs12023543 C G 0 Heart 0.0250909 1014566
chr1 229893382 rs77735132 C T 300154 Pancreas 0.19782 1012012
chr1 229918311 rs10218828 G C 275225 Uterus 0.310051 1012202
chr1 230272688 rs6541292 C A 0 Thyroid 2.53881e-05 1015137
chr1 230280870 rs60434165 TA T 0 Liver 0.0220415 1015306
chr1 230028977 rs116420863 T C 164559 Lung 0.328997 1013033
chr1 230296102 rs78176593 A G,T 0 Adrenal 0.309454 1015557
Details of GALNT2[ENSG00000143641.8]
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Genomic Location chr1:230193536-230417870[+]
TSS 230193536
Gene Name GALNT2
Ensembl ID ENSG00000143641.8
ENTREZID 2590
Uniprot
Q10471
G3V1S6
B7Z6K2
Protein Name
Polypeptide N-acetylgalactosaminyltransferase
Polypeptide N-acetylgalactosaminyltransferase 2
Expression levels of GALNT2[ENSG00000143641.8]
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