EnhancerDB
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Enhancers that regulate RAB4A[ENSG00000168118.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 229305765 229309915 enh50234 229406822 96907
Pancreas Large Intestine Stomach
chr1 229307664 229307899 vista5454 229406822 98923
VISTA
chr1 229314000 229322055 enh50235 229406822 84767
Pancreas Neural Stem Cells (H9) Large Intestine Stomach
chr1 229323205 229330497 enh12762 229406822 76325
Skin (Keratinocyte) Placenta Neural Stem Cells (H9) Cervix (HeLa-S3)
chr1 229326926 229327085 vista5455 229406822 79737
VISTA
chr1 229327236 229327413 vista5456 229406822 79409
VISTA
chr1 229327820 229328069 vista5457 229406822 78753
VISTA
chr1 229330645 229348935 enh12763 229406822 57887
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Ovary Blood (T-cell) Esophagus Brain (SK-N-MC) Stomach Muscle (A673) Placenta Uterus Neural Stem Cells (H9) Thymus Heart
chr1 229333028 229333175 vista5458 229406822 73647
VISTA
chr1 229335784 229335916 vista5459 229406822 70906
VISTA
chr1 229339200 229339557 vista5460 229406822 67265
VISTA
chr1 229341143 229341392 vista5461 229406822 65430
VISTA
chr1 229351665 229369695 enh12764 229406822 37127
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
chr1 229357329 229357959 vista5462 229406822 48863
VISTA
chr1 229365571 229365974 vista5463 229406822 40848
VISTA
chr1 229366402 229366798 vista5464 229406822 40024
VISTA
chr1 229372109 229376699 enh61977 229406822 30123
Esophagus
chr1 229374566 229374670 vista5465 229406822 32152
VISTA
chr1 229386846 229398355 enh47306 229406822 8467
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Stomach
chr1 229388898 229389111 vista5466 229406822 17711
VISTA
chr1 229409656 229409997 vista5467 229406822 2834
VISTA
chr1 229413885 229418955 enh79416 229406822 7063
Prostate (PC-3)
chr1 229443522 229448875 enh64202 229406822 36700
Pancreas Heart
chr1 229451811 229456025 enh43168 229406822 44989
Muscle (Myotube)
chr1 229468565 229476095 enh12765 229406822 61743
Placenta Blood (T-cell)
chr1 229473732 229474385 vista5468 229406822 66910
VISTA
chr1 229497950 229509155 enh979 229406822 91128
Muscle (Myotube) Peripheral Blood (MM.1S) Blood (Karpas-422)
Transcript facotrs that regulate RAB4A[ENSG00000168118.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 229407481 229410185 ZNF274 GTRD no Bone Marrow (K562) 229406822 659 107878086
chr1 229409320 229409990 ZNF274 GTRD no Liver (HepG2) 229406822 2498 107878087
chr1 229409342 229410045 ZNF274 GTRD no Liver (HepG2) 229406822 2520 107878088
chr1 229409349 229409805 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2527 107878089
chr1 229409370 229409826 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2548 107878090
chr1 229409390 229410146 ZNF274 GTRD no Liver (HepG2) 229406822 2568 107878091
chr1 229409422 229410038 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2600 107878092
chr1 229409425 229410044 ZNF274 GTRD no Liver (HepG2) 229406822 2603 107878093
chr1 229409427 229409743 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2605 107878094
chr1 229409432 229410085 ZNF274 GTRD no Liver (HepG2) 229406822 2610 107878095
chr1 229409435 229410123 ZNF274 GTRD no Liver (HepG2) 229406822 2613 107878096
chr1 229409439 229409799 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2617 107878097
chr1 229409476 229410226 ZNF274 GTRD no Liver (HepG2) 229406822 2654 107878098
chr1 229409498 229409898 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2676 107878099
chr1 229409522 229409846 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2700 107878100
chr1 229409522 229409855 FOXA1 UCSC Txn Factor no Conserved 229406822 2700 107878101
chr1 229409522 229410031 ZNF274 GTRD no Liver (HepG2) 229406822 2700 107878102
chr1 229409526 229409827 FOXA2 UCSC Txn Factor no Conserved 229406822 2704 107878103
chr1 229409526 229409827 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2704 107878104
chr1 229409547 229409837 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2725 107878105
chr1 229409553 229409893 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2731 107878106
chr1 229409558 229410040 ZNF274 GTRD no Liver (HepG2) 229406822 2736 107878107
chr1 229409565 229410005 ZNF274 GTRD no Liver (HepG2) 229406822 2743 107878108
chr1 229409572 229409808 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2750 107878109
chr1 229409574 229410041 ZNF274 GTRD no Liver (HepG2) 229406822 2752 107878110
chr1 229409576 229410046 ZNF274 GTRD no Liver (HepG2) 229406822 2754 107878111
chr1 229409576 229410150 ZNF274 GTRD no Liver (HepG2) 229406822 2754 107878112
chr1 229409583 229409825 EP300 UCSC Txn Factor no Conserved 229406822 2761 107878113
chr1 229409585 229409855 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 229406822 2763 107878114
chr1 229409585 229410064 ZNF274 GTRD no Liver (HepG2) 229406822 2763 107878115
chr1 229409591 229409875 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 229406822 2769 107878116
chr1 229409591 229410104 ZNF274 GTRD no Liver (HepG2) 229406822 2769 107878117
chr1 229409601 229409970 ZNF274 GTRD no Liver (HepG2) 229406822 2779 107878118
chr1 229409602 229409994 ZNF274 GTRD no Liver (HepG2) 229406822 2780 107878119
chr1 229409606 229409799 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2784 107878120
chr1 229409614 229409785 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2792 107878121
chr1 229409615 229410055 TCF7L2 GTRD no Colon (HCT116) 229406822 2793 107878122
chr1 229409617 229409784 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2795 107878123
chr1 229409618 229410224 ZNF274 GTRD no Liver (HepG2) 229406822 2796 107878124
chr1 229409623 229410049 ZNF274 GTRD no Liver (HepG2) 229406822 2801 107878125
chr1 229409629 229410014 ZNF274 GTRD no Liver (HepG2) 229406822 2807 107878126
chr1 229409635 229410002 ZNF274 GTRD no Liver (HepG2) 229406822 2813 107878127
chr1 229409640 229409803 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 229406822 2818 107878128
chr1 229409643 229410282 TCF7L2 GTRD no Colon (HCT116) 229406822 2821 107878129
chr1 229409643 229410552 TCF7L2 GTRD no Colon (HCT116) 229406822 2821 107878130
chr1 229409646 229410084 ZNF274 GTRD no Liver (HepG2) 229406822 2824 107878131
chr1 229409672 229409677 ETS2 TRANSFAC yes 229406822 2850 118476280
chr1 229409672 229409682 TEAD1 JASPAR yes 229406822 2850 118476281
chr1 229409672 229409682 TEAD4 JASPAR yes 229406822 2850 118476282
chr1 229409673 229409681 TEAD3 JASPAR yes 229406822 2851 118476283
chr1 229409674 229409689 FOXA1 JASPAR yes 229406822 2852 118476284
chr1 229409676 229409688 FOXC2 JASPAR yes 229406822 2854 118476285
chr1 229409677 229409688 FOXC1 JASPAR yes 229406822 2855 118476286
chr1 229409678 229409689 FOXA1 JASPAR yes 229406822 2856 118476287
chr1 229409686 229409689 MYB TRANSFAC yes 229406822 2864 118476288
chr1 229409686 229409700 NR2F1 JASPAR yes 229406822 2864 118476289
chr1 229409686 229409700 RXRB JASPAR yes 229406822 2864 118476290
chr1 229409686 229409700 RXRG JASPAR yes 229406822 2864 118476291
chr1 229409686 229409701 HNF4G JASPAR yes 229406822 2864 118476292
chr1 229409686 229409701 NR2C2 JASPAR yes 229406822 2864 118476293
chr1 229409697 229409711 TCF7L2 JASPAR yes 229406822 2875 118476294
chr1 229409700 229409706 LEF1 TRANSFAC yes 229406822 2878 118476295
chr1 229409700 229409706 SOX10 JASPAR yes 229406822 2878 118476296
chr1 229409712 229409727 FOXA1 JASPAR yes 229406822 2890 118476297
chr1 229409716 229409720 YY1 TRANSFAC yes 229406822 2894 118476298
chr1 229409716 229409727 FOXA1 JASPAR yes 229406822 2894 118476299
chr1 229409751 229409758 MEIS1 JASPAR yes 229406822 2929 118476300
chr1 229409751 229409759 MEIS2 JASPAR yes 229406822 2929 118476301
chr1 229409773 229410333 TCF7L2 GTRD no Colon (HCT116) 229406822 2951 107878132
chr1 229409778 229409799 IRF1 JASPAR yes 229406822 2956 118476302
chr1 229409780 229409795 STAT2 JASPAR yes 229406822 2958 118476303
chr1 229409782 229409797 IRF9 JASPAR yes 229406822 2960 118476304
chr1 229409784 229409805 IRF1 JASPAR yes 229406822 2962 118476305
chr1 229409785 229409791 TCF4 TRANSFAC yes 229406822 2963 118476306
chr1 229409785 229409806 IRF1 JASPAR yes 229406822 2963 118476307
chr1 229409786 229409801 PRDM1 JASPAR yes 229406822 2964 118476308
chr1 229409786 229409801 STAT2 JASPAR yes 229406822 2964 118476309
chr1 229409787 229409801 STAT1 JASPAR yes 229406822 2965 118476310
chr1 229409788 229409802 SPIC JASPAR yes 229406822 2966 118476311
chr1 229409790 229409811 IRF1 JASPAR yes 229406822 2968 118476312
chr1 229409791 229409812 IRF1 JASPAR yes 229406822 2969 118476313
chr1 229409792 229409807 PRDM1 JASPAR yes 229406822 2970 118476314
chr1 229409792 229409813 IRF1 JASPAR yes 229406822 2970 118476315
chr1 229409793 229409814 IRF1 JASPAR yes 229406822 2971 118476316
chr1 229409794 229409809 FOXP1 JASPAR yes 229406822 2972 118476317
chr1 229409794 229409815 IRF1 JASPAR yes 229406822 2972 118476318
chr1 229409795 229409810 FOXP1 JASPAR yes 229406822 2973 118476319
chr1 229409795 229409816 IRF1 JASPAR yes 229406822 2973 118476320
chr1 229409796 229409811 FOXP1 JASPAR yes 229406822 2974 118476321
chr1 229409796 229409817 IRF1 JASPAR yes 229406822 2974 118476322
chr1 229409797 229409812 FOXP1 JASPAR yes 229406822 2975 118476323
chr1 229409797 229409818 IRF1 JASPAR yes 229406822 2975 118476324
chr1 229409798 229409813 FOXP1 JASPAR yes 229406822 2976 118476325
chr1 229409799 229409814 FOXP1 JASPAR yes 229406822 2977 118476326
chr1 229409800 229409815 FOXP1 JASPAR yes 229406822 2978 118476327
chr1 229409801 229409816 FOXP1 JASPAR yes 229406822 2979 118476328
chr1 229409802 229409817 FOXP1 JASPAR yes 229406822 2980 118476329
chr1 229409803 229409818 FOXP1 JASPAR yes 229406822 2981 118476330
chr1 229409804 229409819 FOXP1 JASPAR yes 229406822 2982 118476331
chr1 229409805 229409820 FOXP1 JASPAR yes 229406822 2983 118476332
chr1 229409828 229410625 TCF7L2 GTRD no Colon (HCT116) 229406822 3006 107878133
chr1 229409829 229409840 NFE2L2 JASPAR yes 229406822 3007 118476333
chr1 229409833 229409837 NFE TRANSFAC yes 229406822 3011 118476334
chr1 229409866 229409880 TLX1 JASPAR yes 229406822 3044 118476335
chr1 229409870 229409891 ZNF263 JASPAR yes 229406822 3048 118476336
chr1 229409888 229409894 MZF1 JASPAR yes 229406822 3066 118476337
chr1 229409908 229409918 NKX2-3 JASPAR yes 229406822 3086 118476338
chr1 229409908 229409922 PLAG1 JASPAR yes 229406822 3086 118476339
chr1 229409909 229409918 NKX2-8 JASPAR yes 229406822 3087 118476340
chr1 229409931 229409943 ZBTB7A JASPAR yes 229406822 3109 118476341
chr1 229409933 229409948 SCRT1 JASPAR yes 229406822 3111 118476342
chr1 229409937 229409946 SNAI2 JASPAR yes 229406822 3115 118476343
chr1 229409937 229409947 ID4 JASPAR yes 229406822 3115 118476344
chr1 229409937 229409947 TCF3 JASPAR yes 229406822 3115 118476345
chr1 229409937 229409947 TCF4 JASPAR yes 229406822 3115 118476346
chr1 229409952 229409960 TBX5 JASPAR yes 229406822 3130 118476347
chr1 229409952 229409961 ZEB1 JASPAR yes 229406822 3130 118476348
chr1 229409952 229409965 ZBTB18 JASPAR yes 229406822 3130 118476349
chr1 229409953 229409963 ID4 JASPAR yes 229406822 3131 118476350
chr1 229409953 229409963 TCF3 JASPAR yes 229406822 3131 118476351
chr1 229409953 229409963 TCF4 JASPAR yes 229406822 3131 118476352
chr1 229409955 229409960 USF2 TRANSFAC yes 229406822 3133 118476353
chr1 229409960 229409981 IRF1 JASPAR yes 229406822 3138 118476354
chr1 229409961 229409982 IRF1 JASPAR yes 229406822 3139 118476355
chr1 229409965 229409980 FOXP1 JASPAR yes 229406822 3143 118476356
chr1 229409966 229409981 FOXP1 JASPAR yes 229406822 3144 118476357
chr1 229409966 229409987 IRF1 JASPAR yes 229406822 3144 118476358
chr1 229409967 229409982 FOXP1 JASPAR yes 229406822 3145 118476359
chr1 229409967 229409988 IRF1 JASPAR yes 229406822 3145 118476360
chr1 229409968 229409983 FOXP1 JASPAR yes 229406822 3146 118476361
chr1 229409969 229409984 FOXP1 JASPAR yes 229406822 3147 118476362
chr1 229409970 229409985 FOXP1 JASPAR yes 229406822 3148 118476363
chr1 229409972 229409993 IRF1 JASPAR yes 229406822 3150 118476364
chr1 229409972 229410563 ZNF274 GTRD no Blood (GM12878) 229406822 3150 107878134
SNPs associated with RAB4A[ENSG00000168118.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 229523214 rs6587333 G A 81573 Heart 0.205217 1010514
chr1 229775637 rs28669190 C G 333996 Pancreas 0.046572 1011316
chr1 229937107 rs10495283 T C 495466 Uterus 0.444867 1012226
chr1 229614961 rs79960826 A C 173320 Liver 0.0604591 1010909
chr1 229105822 rs61825064 T C 301000 Adrenal 0.129267 1006349
Details of RAB4A[ENSG00000168118.7]
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Genomic Location chr1:229406822-229441641[+]
TSS 229406822
Gene Name RAB4A
Ensembl ID ENSG00000168118.7
ENTREZID 5867
Uniprot
A0A024R3U9
P20338
A0A087WYT5
Protein Name
isoform CRA_b
member RAS oncogene family
HRES-1/RAB4 variant
RAB4A
Ras-related protein Rab-4A
Expression levels of RAB4A[ENSG00000168118.7]
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