EnhancerDB
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Enhancers that regulate CASC3[ENSG00000108349.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 38192436 38197477 enh32188 38296571 99094
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Colon (HCT116) Pancreas Spleen Uterus Heart
chr17 38219066 38232975 enh17137 38296571 63596
Bone Marrow (K562) Cervix (HeLa-S3) Bone (Osteoblast) Muscle (A673) Placenta Pancreas Blood (T-cell) Heart
chr17 38224836 38229126 vista690 38296571 67445
VISTA
chr17 38225703 38226086 vista24679 38296571 70485
VISTA
chr17 38226807 38227182 vista24680 38296571 69389
VISTA
chr17 38227405 38227627 vista24681 38296571 68944
VISTA
chr17 38227745 38227903 vista24682 38296571 68668
VISTA
chr17 38229285 38229466 vista24683 38296571 67105
VISTA
chr17 38231838 38232188 vista24684 38296571 64383
VISTA
chr17 38235765 38239915 enh109766 38296571 56656
Stomach
chr17 38254249 38254664 vista24685 38296571 41907
VISTA
chr17 38259185 38273195 enh4407 38296571 23376
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
chr17 38263317 38263642 vista24686 38296571 32929
VISTA
chr17 38263980 38264229 vista24687 38296571 32342
VISTA
chr17 38264417 38264842 vista24688 38296571 31729
VISTA
chr17 38266320 38266663 vista24689 38296571 29908
VISTA
chr17 38300465 38304615 enh99417 38296571 3894
Uterus
chr17 38307339 38311980 enh57706 38296571 10768
Bone Marrow (K562) Blood (GM12878) Lung (A549)
chr17 38312329 38317015 enh62614 38296571 15758
Esophagus Pancreas
chr17 38331645 38335795 enh110892 38296571 35074
Cervix (HeLa-S3)
chr17 38353865 38360315 enh17138 38296571 57294
Placenta Uterus Brain (SK-N-MC) Liver (HepG2)
chr17 38359505 38359802 vista24690 38296571 62934
VISTA
chr17 38363685 38367987 enh44428 38296571 67114
Muscle (Myoblast) Muscle (Myotube) Bone (Osteoblast)
chr17 38365489 38365514 vista24691 38296571 68918
VISTA
chr17 38374652 38374886 vista24692 38296571 78081
VISTA
chr17 38376745 38383295 enh32189 38296571 80174
Skin (Keratinocyte) Astrocyte Bone (Osteoblast) Thyroid Pancreas Stomach
chr17 38389405 38393555 enh109767 38296571 92834
Stomach
Transcript facotrs that regulate CASC3[ENSG00000108349.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 38300486 38300490 LFA1 TRANSFAC yes 38296571 3915 54194783
chr17 38300493 38300504 E2F6 JASPAR yes 38296571 3922 54194784
chr17 38300505 38300509 NFE TRANSFAC yes 38296571 3934 54194785
chr17 38300508 38300523 FOXP1 JASPAR yes 38296571 3937 54194786
chr17 38300509 38300530 IRF1 JASPAR yes 38296571 3938 54194787
chr17 38300513 38300525 IRF1 JASPAR yes 38296571 3942 54194788
chr17 38300513 38300528 STAT2 JASPAR yes 38296571 3942 54194789
chr17 38300514 38300529 FOXP1 JASPAR yes 38296571 3943 54194790
chr17 38300514 38300535 IRF1 JASPAR yes 38296571 3943 54194791
chr17 38300515 38300536 IRF1 JASPAR yes 38296571 3944 54194792
chr17 38300516 38300536 RREB1 JASPAR yes 38296571 3945 54194793
chr17 38300517 38300531 IRF7 JASPAR yes 38296571 3946 54194794
chr17 38300518 38300536 IRF2 JASPAR yes 38296571 3947 54194795
chr17 38300519 38300531 IRF1 JASPAR yes 38296571 3948 54194796
chr17 38300519 38300534 STAT2 JASPAR yes 38296571 3948 54194797
chr17 38300520 38300535 FOXP1 JASPAR yes 38296571 3949 54194798
chr17 38300520 38300541 IRF1 JASPAR yes 38296571 3949 54194799
chr17 38300522 38300537 IRF9 JASPAR yes 38296571 3951 54194800
chr17 38300523 38300537 IRF7 JASPAR yes 38296571 3952 54194801
chr17 38300524 38300539 STAT2 JASPAR yes 38296571 3953 54194802
chr17 38300524 38300542 IRF2 JASPAR yes 38296571 3953 54194803
chr17 38300525 38300537 IRF1 JASPAR yes 38296571 3954 54194804
chr17 38300540 38300551 NFIL3 JASPAR yes 38296571 3969 54194805
chr17 38300544 38300555 FOXB1 JASPAR yes 38296571 3973 54194806
chr17 38300544 38300555 FOXC1 JASPAR yes 38296571 3973 54194807
chr17 38300544 38300556 FOXC2 JASPAR yes 38296571 3973 54194808
chr17 38300545 38300557 FOXI1 JASPAR yes 38296571 3974 54194809
chr17 38300582 38300603 IRF1 JASPAR yes 38296571 4011 54194810
chr17 38300584 38300599 PRDM1 JASPAR yes 38296571 4013 54194811
chr17 38300584 38300599 STAT2 JASPAR yes 38296571 4013 54194812
chr17 38300585 38300599 SPIC JASPAR yes 38296571 4014 54194813
chr17 38300585 38300599 STAT1 JASPAR yes 38296571 4014 54194814
chr17 38300586 38300600 IRF7 JASPAR yes 38296571 4015 54194815
chr17 38300586 38300600 IRF8 JASPAR yes 38296571 4015 54194816
chr17 38300586 38300601 IRF9 JASPAR yes 38296571 4015 54194817
chr17 38300586 38300607 IRF1 JASPAR yes 38296571 4015 54194818
chr17 38300587 38300602 FOXP1 JASPAR yes 38296571 4016 54194819
chr17 38300587 38300608 IRF1 JASPAR yes 38296571 4016 54194820
chr17 38300588 38300603 PRDM1 JASPAR yes 38296571 4017 54194821
chr17 38300588 38300609 IRF1 JASPAR yes 38296571 4017 54194822
chr17 38300592 38300613 IRF1 JASPAR yes 38296571 4021 54194823
chr17 38300593 38300608 FOXP1 JASPAR yes 38296571 4022 54194824
chr17 38300594 38300615 IRF1 JASPAR yes 38296571 4023 54194825
chr17 38300595 38300610 FOXP1 JASPAR yes 38296571 4024 54194826
chr17 38300595 38300616 IRF1 JASPAR yes 38296571 4024 54194827
chr17 38300597 38300612 FOXP1 JASPAR yes 38296571 4026 54194828
chr17 38300598 38300613 FOXP1 JASPAR yes 38296571 4027 54194829
chr17 38300634 38300637 MYB TRANSFAC yes 38296571 4063 54194830
chr17 38300665 38300682 ESR1 JASPAR yes 38296571 4094 54194831
chr17 38300704 38300723 REST JASPAR yes 38296571 4133 54194832
chr17 38300707 38300711 NFE TRANSFAC yes 38296571 4136 54194833
chr17 38300735 38300744 SNAI2 JASPAR yes 38296571 4164 54194834
chr17 38300735 38300745 ID4 JASPAR yes 38296571 4164 54194835
chr17 38300735 38300745 TCF3 JASPAR yes 38296571 4164 54194836
chr17 38300735 38300745 TCF4 JASPAR yes 38296571 4164 54194837
chr17 38300745 38300765 RREB1 JASPAR yes 38296571 4174 54194838
chr17 38300767 38300779 FOXI1 JASPAR yes 38296571 4196 54194839
chr17 38300770 38300774 YY1 TRANSFAC yes 38296571 4199 54194840
chr17 38300785 38300798 NFKB2 JASPAR yes 38296571 4214 54194841
chr17 38300811 38300815 ESR1 TRANSFAC yes 38296571 4240 54194842
chr17 38300828 38300838 SREBF2 JASPAR yes 38296571 4257 54194843
chr17 38300828 38300839 USF1 JASPAR yes 38296571 4257 54194844
chr17 38300828 38300839 USF2 JASPAR yes 38296571 4257 54194845
chr17 38300870 38300879 SNAI2 JASPAR yes 38296571 4299 54194846
chr17 38300870 38300880 FIGLA JASPAR yes 38296571 4299 54194847
chr17 38300873 38300889 ZNF143 JASPAR yes 38296571 4302 54194848
chr17 38300875 38300881 ZNF354C JASPAR yes 38296571 4304 54194849
chr17 38300884 38300892 MGA JASPAR yes 38296571 4313 54194850
chr17 38300884 38300892 TBX15 JASPAR yes 38296571 4313 54194851
chr17 38300884 38300892 TBX1 JASPAR yes 38296571 4313 54194852
chr17 38300884 38300892 TBX4 JASPAR yes 38296571 4313 54194853
chr17 38300884 38300892 TBX5 JASPAR yes 38296571 4313 54194854
chr17 38300884 38300897 SMAD2 JASPAR yes 38296571 4313 54194855
chr17 38300898 38300907 HIC2 JASPAR yes 38296571 4327 54194856
chr17 38300905 38300926 IRF1 JASPAR yes 38296571 4334 54194857
chr17 38300906 38300927 IRF1 JASPAR yes 38296571 4335 54194858
chr17 38300907 38300928 IRF1 JASPAR yes 38296571 4336 54194859
chr17 38300908 38300923 FOXP1 JASPAR yes 38296571 4337 54194860
chr17 38300908 38300929 IRF1 JASPAR yes 38296571 4337 54194861
chr17 38300909 38300930 IRF1 JASPAR yes 38296571 4338 54194862
chr17 38300910 38300925 FOXP1 JASPAR yes 38296571 4339 54194863
chr17 38300910 38300931 IRF1 JASPAR yes 38296571 4339 54194864
chr17 38300911 38300926 FOXP1 JASPAR yes 38296571 4340 54194865
chr17 38300911 38300932 IRF1 JASPAR yes 38296571 4340 54194866
chr17 38300912 38300927 FOXP1 JASPAR yes 38296571 4341 54194867
chr17 38300912 38300933 IRF1 JASPAR yes 38296571 4341 54194868
chr17 38300913 38300928 FOXP1 JASPAR yes 38296571 4342 54194869
chr17 38300913 38300934 IRF1 JASPAR yes 38296571 4342 54194870
chr17 38300914 38300929 FOXP1 JASPAR yes 38296571 4343 54194871
chr17 38300915 38300930 FOXP1 JASPAR yes 38296571 4344 54194872
chr17 38300916 38300931 FOXP1 JASPAR yes 38296571 4345 54194873
chr17 38300917 38300932 FOXP1 JASPAR yes 38296571 4346 54194874
chr17 38300918 38300933 FOXP1 JASPAR yes 38296571 4347 54194875
chr17 38300919 38300934 FOXP1 JASPAR yes 38296571 4348 54194876
chr17 38300920 38300935 FOXP1 JASPAR yes 38296571 4349 54194877
chr17 38300921 38300936 FOXP1 JASPAR yes 38296571 4350 54194878
chr17 38300923 38300938 MEF2C JASPAR yes 38296571 4352 54194879
chr17 38300932 38300938 TBP TRANSFAC yes 38296571 4361 54194880
chr17 38300934 38300948 SPI1 JASPAR yes 38296571 4363 54194881
chr17 38300934 38300950 SOX8 JASPAR yes 38296571 4363 54194882
chr17 38300939 38300949 SP1 JASPAR yes 38296571 4368 54194883
chr17 38300947 38300966 PAX5 JASPAR yes 38296571 4376 54194884
chr17 38300959 38300970 NFE2L2 JASPAR yes 38296571 4388 54194885
chr17 38300983 38300988 MYC TRANSFAC yes 38296571 4412 54194886
chr17 38300992 38300996 ESR1 TRANSFAC yes 38296571 4421 54194887
chr17 38300992 38301009 PAX1 JASPAR yes 38296571 4421 54194888
chr17 38300996 38301014 ESR2 JASPAR yes 38296571 4425 54194889
chr17 38300997 38301014 ESR1 JASPAR yes 38296571 4426 54194890
chr17 38301015 38301029 NR2F1 JASPAR yes 38296571 4444 54194891
chr17 38301042 38301060 RARA JASPAR yes 38296571 4471 54194892
chr17 38301046 38301061 ZIC3 JASPAR yes 38296571 4475 54194893
chr17 38301052 38301061 NKX2-8 JASPAR yes 38296571 4481 54194894
chr17 38301052 38301062 NKX2-3 JASPAR yes 38296571 4481 54194895
chr17 38301052 38301070 MAFF JASPAR yes 38296571 4481 54194896
chr17 38301054 38301065 NRL JASPAR yes 38296571 4483 54194897
chr17 38301054 38301069 MAFK JASPAR yes 38296571 4483 54194898
chr17 38301073 38301084 NFE2 JASPAR yes 38296571 4502 54194899
chr17 38301074 38301085 FOSL2 JASPAR yes 38296571 4503 54194900
chr17 38301089 38301104 MEF2C JASPAR yes 38296571 4518 54194901
chr17 38301092 38301107 FOXP1 JASPAR yes 38296571 4521 54194902
chr17 38301093 38301108 FOXP1 JASPAR yes 38296571 4522 54194903
chr17 38301093 38301114 IRF1 JASPAR yes 38296571 4522 54194904
chr17 38301094 38301109 FOXP1 JASPAR yes 38296571 4523 54194905
chr17 38301094 38301115 IRF1 JASPAR yes 38296571 4523 54194906
chr17 38301095 38301110 FOXP1 JASPAR yes 38296571 4524 54194907
chr17 38301106 38301117 PHOX2A JASPAR yes 38296571 4535 54194908
chr17 38301108 38301129 IRF1 JASPAR yes 38296571 4537 54194909
chr17 38301110 38301125 STAT2 JASPAR yes 38296571 4539 54194910
chr17 38301113 38301128 FOXP1 JASPAR yes 38296571 4542 54194911
chr17 38301114 38301129 FOXP1 JASPAR yes 38296571 4543 54194912
chr17 38301115 38301130 FOXP1 JASPAR yes 38296571 4544 54194913
chr17 38301116 38301131 FOXP1 JASPAR yes 38296571 4545 54194914
chr17 38301117 38301132 FOXP1 JASPAR yes 38296571 4546 54194915
chr17 38301118 38301133 FOXP1 JASPAR yes 38296571 4547 54194916
chr17 38301123 38301133 HOXB13 JASPAR yes 38296571 4552 54194917
chr17 38301123 38301133 HOXD13 JASPAR yes 38296571 4552 54194918
chr17 38301123 38301134 HOXA10 JASPAR yes 38296571 4552 54194919
chr17 38301179 38301189 SREBF1 JASPAR yes 38296571 4608 54194920
chr17 38301181 38301198 ESR1 JASPAR yes 38296571 4610 54194921
chr17 38301246 38301254 RHOXF1 JASPAR yes 38296571 4675 54194922
chr17 38301265 38301275 SP1 JASPAR yes 38296571 4694 54194923
chr17 38301268 38301273 SP1 TRANSFAC yes 38296571 4697 54194924
chr17 38301283 38301298 FOXP1 JASPAR yes 38296571 4712 54194925
chr17 38301301 38301314 NFKB1 JASPAR yes 38296571 4730 54194926
chr17 38301301 38301314 NFKB2 JASPAR yes 38296571 4730 54194927
chr17 38301304 38301315 CEBPB JASPAR yes 38296571 4733 54194928
chr17 38301307 38301319 YY1 JASPAR yes 38296571 4736 54194929
chr17 38301318 38301322 ESR1 TRANSFAC yes 38296571 4747 54194930
chr17 38301329 38301347 RARA JASPAR yes 38296571 4758 54194931
chr17 38301336 38301349 NR2F1 JASPAR yes 38296571 4765 54194932
chr17 38301340 38301348 CREB1 JASPAR yes 38296571 4769 54194933
chr17 38301344 38301354 SREBF2 JASPAR yes 38296571 4773 54194934
chr17 38301344 38301355 USF1 JASPAR yes 38296571 4773 54194935
chr17 38301344 38301355 USF2 JASPAR yes 38296571 4773 54194936
chr17 38301349 38301360 FOSL2 JASPAR yes 38296571 4778 54194937
chr17 38301357 38301371 PLAG1 JASPAR yes 38296571 4786 54194938
chr17 38301390 38301410 ESR1 JASPAR yes 38296571 4819 54194939
chr17 38301392 38301403 NFE2 JASPAR yes 38296571 4821 54194940
chr17 38301393 38301404 FOSL2 JASPAR yes 38296571 4822 54194941
chr17 38301393 38301411 ESR2 JASPAR yes 38296571 4822 54194942
chr17 38301395 38301410 ESR2 JASPAR yes 38296571 4824 54194943
chr17 38301398 38301412 PLAG1 JASPAR yes 38296571 4827 54194944
chr17 38301399 38301404 MYC TRANSFAC yes 38296571 4828 54194945
chr17 38301400 38301410 SP1 JASPAR yes 38296571 4829 54194946
chr17 38301410 38301430 RREB1 JASPAR yes 38296571 4839 54194947
chr17 38301410 38301431 IRF1 JASPAR yes 38296571 4839 54194948
chr17 38301411 38301415 YY1 TRANSFAC yes 38296571 4840 54194949
chr17 38301415 38301435 RREB1 JASPAR yes 38296571 4844 54194950
chr17 38301416 38301437 IRF1 JASPAR yes 38296571 4845 54194951
chr17 38301417 38301423 TCF4 TRANSFAC yes 38296571 4846 54194952
chr17 38301417 38301432 FOXP1 JASPAR yes 38296571 4846 54194953
chr17 38301420 38301432 IRF1 JASPAR yes 38296571 4849 54194954
chr17 38301420 38301440 RREB1 JASPAR yes 38296571 4849 54194955
chr17 38301421 38301442 IRF1 JASPAR yes 38296571 4850 54194956
chr17 38301422 38301428 TCF4 TRANSFAC yes 38296571 4851 54194957
chr17 38301422 38301437 FOXP1 JASPAR yes 38296571 4851 54194958
chr17 38301425 38301437 IRF1 JASPAR yes 38296571 4854 54194959
chr17 38301427 38301433 TCF4 TRANSFAC yes 38296571 4856 54194960
chr17 38301427 38301442 FOXP1 JASPAR yes 38296571 4856 54194961
chr17 38301428 38301443 STAT2 JASPAR yes 38296571 4857 54194962
chr17 38301430 38301442 IRF1 JASPAR yes 38296571 4859 54194963
chr17 38301432 38301438 TCF4 TRANSFAC yes 38296571 4861 54194964
chr17 38301432 38301447 FOXP1 JASPAR yes 38296571 4861 54194965
chr17 38301479 38301490 CEBPA JASPAR yes 38296571 4908 54194966
chr17 38301480 38301491 CEBPB JASPAR yes 38296571 4909 54194967
chr17 38301508 38301513 SP1 TRANSFAC yes 38296571 4937 54194968
chr17 38301508 38301514 SP1 TRANSFAC yes 38296571 4937 54194969
chr17 38301511 38301517 SP1 TRANSFAC yes 38296571 4940 54194970
chr17 38301528 38301533 H4TF1 TRANSFAC yes 38296571 4957 54194971
chr17 38301529 38301550 ZNF263 JASPAR yes 38296571 4958 54194972
chr17 38301560 38301575 SCRT1 JASPAR yes 38296571 4989 54194973
chr17 38301564 38301573 SNAI2 JASPAR yes 38296571 4993 54194974
chr17 38301564 38301574 FIGLA JASPAR yes 38296571 4993 54194975
chr17 38301564 38301574 ID4 JASPAR yes 38296571 4993 54194976
chr17 38301564 38301574 TCF3 JASPAR yes 38296571 4993 54194977
chr17 38301564 38301574 TCF4 JASPAR yes 38296571 4993 54194978
chr17 38301566 38301575 ZEB1 JASPAR yes 38296571 4995 54194979
SNPs associated with CASC3[ENSG00000108349.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 38609207 rs1009728 T C 280771 Esophagus 0.152907 4867005
chr17 39056313 rs4890099 A T 727877 Ovary 0.430265 4870172
chr17 38892712 rs6503553 T C 564276 Liver 0.158845 4869660
chr17 38635897 rs8076413 G A 307461 Adrenal 0.169195 4867307
Details of CASC3[ENSG00000108349.10]
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Genomic Location chr17:38296571-38328436[+]
TSS 38296571
Gene Name CASC3
Ensembl ID ENSG00000108349.10
ENTREZID 22794
Uniprot
O15234
Protein Name
isoform CRA_a
Cancer susceptibility candidate 3
Protein CASC3
Expression levels of CASC3[ENSG00000108349.10]
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