EnhancerDB
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Enhancers that regulate VMP1[ENSG00000062716.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 57698412 57698732 vista25338 57784553 85821
VISTA
chr17 57699645 57721455 enh4504 57784553 63098
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Esophagus Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
chr17 57787983 57788139 vista25339 57784553 3430
VISTA
chr17 57798345 57805319 enh52542 57784553 13792
Liver (HepG2) Large Intestine Esophagus Lung Stomach Lung (PC-9) Breast Uterus Epithelial (MCF-7)
chr17 57820705 57849586 enh4505 57784553 36152
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr17 57829892 57830070 vista25340 57784553 45339
VISTA
chr17 57830594 57831044 vista25341 57784553 46041
VISTA
chr17 57831888 57832338 vista25342 57784553 47335
VISTA
chr17 57833423 57834077 vista25343 57784553 48870
VISTA
chr17 57837481 57837783 vista25344 57784553 52928
VISTA
chr17 57839956 57840355 vista25345 57784553 55403
VISTA
chr17 57841314 57841767 vista25346 57784553 56761
VISTA
chr17 57844650 57844791 vista25347 57784553 60097
VISTA
chr17 57847286 57847866 vista25348 57784553 62733
VISTA
chr17 57852005 57856155 enh96757 57784553 67452
Epithelial (MCF-7)
chr17 57853705 57854627 vista25349 57784553 69152
VISTA
chr17 57857985 57884695 enh4506 57784553 73432
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr17 57860256 57860659 vista25350 57784553 75703
VISTA
chr17 57861698 57862055 vista25351 57784553 77145
VISTA
chr17 57862470 57862813 vista25352 57784553 77917
VISTA
chr17 57863149 57864776 vista706 57784553 78596
VISTA
chr17 57863159 57864676 vista25353 57784553 78606
VISTA
chr17 57866887 57867071 vista25354 57784553 82334
VISTA
chr17 57869540 57869779 vista25355 57784553 84987
VISTA
chr17 57877929 57878135 vista25356 57784553 93376
VISTA
chr17 57881973 57882438 vista25357 57784553 97420
VISTA
chr17 57882537 57882682 vista25358 57784553 97984
VISTA
chr17 57884074 57884248 vista25359 57784553 99521
VISTA
Transcript facotrs that regulate VMP1[ENSG00000062716.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 57787983 57787993 PAX3 JASPAR yes 57784553 3430 21264734
chr17 57787983 57787993 PAX7 JASPAR yes 57784553 3430 21264735
chr17 57787992 57787997 ETS2 TRANSFAC yes 57784553 3439 21264736
chr17 57788050 57788054 NFE TRANSFAC yes 57784553 3497 21264737
chr17 57788052 57788062 TFE3 JASPAR yes 57784553 3499 21264738
chr17 57788052 57788062 TFEB JASPAR yes 57784553 3499 21264739
chr17 57788052 57788062 TFEC JASPAR yes 57784553 3499 21264740
chr17 57788101 57788104 MYB TRANSFAC yes 57784553 3548 21264741
chr17 57788101 57788111 MAX JASPAR yes 57784553 3548 21264742
chr17 57788101 57788113 HES5 JASPAR yes 57784553 3548 21264743
chr17 57788101 57788113 HES7 JASPAR yes 57784553 3548 21264744
chr17 57788102 57788112 CLOCK JASPAR yes 57784553 3549 21264745
chr17 57788102 57788112 HEY1 JASPAR yes 57784553 3549 21264746
chr17 57788102 57788112 HEY2 JASPAR yes 57784553 3549 21264747
chr17 57788102 57788112 MAX JASPAR yes 57784553 3549 21264748
chr17 57788102 57788112 MLXIPL JASPAR yes 57784553 3549 21264749
chr17 57788102 57788112 MNT JASPAR yes 57784553 3549 21264750
chr17 57788102 57788112 MYF6 JASPAR yes 57784553 3549 21264751
chr17 57788102 57788112 SREBF2 JASPAR yes 57784553 3549 21264752
chr17 57788103 57788113 MAX JASPAR yes 57784553 3550 21264753
chr17 57788104 57788109 MYC TRANSFAC yes 57784553 3551 21264754
chr17 57788104 57788109 USF1 TRANSFAC yes 57784553 3551 21264755
chr17 57788104 57788109 USF2 TRANSFAC yes 57784553 3551 21264756
SNPs associated with VMP1[ENSG00000062716.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 57784528 rs3744382 C A 25 Esophagus 0.0891079 4961248
chr17 57713212 rs78680565 G A 71341 Esophagus 0.134895 4961146
chr17 57714949 rs62084481 T C 69604 Pancreas 0.337495 4961164
chr17 57859959 rs16943862 C T 0 Breast 0.251629 4961723
chr17 57488195 rs73325184 C T 296358 Spleen 0.300395 4959749
chr17 58687197 rs2378768 G T 767581 Uterus 0.829737 4965218
chr17 58220407 rs146954403 G C 300791 Liver 0.467747 4963312
chr17 58656711 rs74983559 G A 737095 Lung 0.10183 4965000
Details of VMP1[ENSG00000062716.6]
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Genomic Location chr17:57784553-57919616[+]
TSS 57784553
Gene Name VMP1
Ensembl ID ENSG00000062716.6
ENTREZID 81671
Uniprot
B4DED7
B4DGZ7
B4DEJ9
D3DU01
Q96GC9
Protein Name
Vacuole membrane protein 1
Expression levels of VMP1[ENSG00000062716.6]
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