EnhancerDB
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Enhancers that regulate CALR[ENSG00000179218.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 12957682 12957886 vista28662 13049392 91506
VISTA
chr19 12994554 12994766 vista28663 13049392 54626
VISTA
chr19 13006078 13006409 vista28664 13049392 42983
VISTA
chr19 13017585 13022255 enh104516 13049392 27137
Peripheral Blood (MM.1S) Stomach
chr19 13023589 13024232 vista28665 13049392 25160
VISTA
chr19 13024998 13025376 vista28666 13049392 24016
VISTA
chr19 13048278 13048689 vista28667 13049392 703
VISTA
chr19 13058519 13066495 enh5014 13049392 9127
Muscle (Myoblast) Blood (Karpas-422)
chr19 13086745 13090915 enh88370 13049392 37353
Pancreas Pancreas (Panc1) Ovary
chr19 13092201 13100895 enh32889 13049392 42809
Bone Marrow (K562) Prostate (RWPE1) Astrocyte Stomach Peripheral Blood (MM.1S) Pancreas Heart
chr19 13094405 13094796 vista28668 13049392 45013
VISTA
chr19 13095998 13096573 vista28669 13049392 46606
VISTA
chr19 13107426 13115175 enh32890 13049392 58034
Astrocyte Bone (Osteoblast) Lung Pancreas Stomach
chr19 13113447 13113871 vista28670 13049392 64055
VISTA
chr19 13115737 13122542 enh88371 13049392 66345
Pancreas Thyroid Prostate (RWPE1)
chr19 13123441 13132975 enh17928 13049392 74049
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Esophagus Bone (Osteoblast) Placenta Muscle (Myoblast) Heart
chr19 13123653 13124120 vista28671 13049392 74261
VISTA
chr19 13125867 13126278 vista28672 13049392 76475
VISTA
chr19 13129050 13129163 vista28673 13049392 79658
VISTA
chr19 13133010 13133371 vista28674 13049392 83618
VISTA
chr19 13137197 13137461 vista28675 13049392 87805
VISTA
chr19 13138013 13138252 vista28676 13049392 88621
VISTA
chr19 13138760 13157647 enh17929 13049392 89368
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13140737 13141121 vista28677 13049392 91345
VISTA
chr19 13143095 13143350 vista28678 13049392 93703
VISTA
chr19 13144758 13144905 vista28679 13049392 95366
VISTA
chr19 13147424 13147812 vista28680 13049392 98032
VISTA
chr19 13148637 13149083 vista28681 13049392 99245
VISTA
Transcript facotrs that regulate CALR[ENSG00000179218.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 13048111 13048401 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 991 108387048
chr19 13048112 13048402 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 990 108387049
chr19 13048114 13048394 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 998 108387050
chr19 13048123 13048499 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 893 108387051
chr19 13048135 13048475 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 917 108387052
chr19 13048137 13048527 MAX UCSC Txn Factor no Conserved 13049392 865 108387053
chr19 13048137 13048527 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 13049392 865 108387054
chr19 13048155 13048431 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 961 108387055
chr19 13048155 13048539 USF1 UCSC Txn Factor no Conserved 13049392 853 108387056
chr19 13048155 13048539 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 13049392 853 108387057
chr19 13048165 13048495 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13049392 897 108387058
chr19 13048184 13048494 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 13049392 898 108387059
chr19 13048193 13048523 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 869 108387060
chr19 13048196 13048472 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 920 108387061
chr19 13048199 13048384 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 1008 108387062
chr19 13048199 13048475 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13049392 917 108387063
chr19 13048217 13048473 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 919 108387064
chr19 13048223 13048459 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 933 108387065
chr19 13048226 13048476 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13049392 916 108387066
chr19 13048240 13048398 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 13049392 994 108387067
chr19 13048244 13048440 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13049392 952 108387068
chr19 13048245 13048436 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13049392 956 108387069
chr19 13048278 13048288 NFKB1 JASPAR yes 13049392 1104 70807132
chr19 13048278 13048288 RELA JASPAR yes 13049392 1104 70807133
chr19 13048278 13048288 REL JASPAR yes 13049392 1104 70807134
chr19 13048278 13048289 NFKB1 JASPAR yes 13049392 1103 70807135
chr19 13048279 13048289 REL JASPAR yes 13049392 1103 70807136
chr19 13048283 13048304 ZNF263 JASPAR yes 13049392 1088 70807137
chr19 13048294 13048308 SPI1 JASPAR yes 13049392 1084 70807138
chr19 13048295 13048303 EHF JASPAR yes 13049392 1089 70807139
chr19 13048299 13048603 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 13049392 789 108387070
chr19 13048316 13048326 SP1 JASPAR yes 13049392 1066 70807140
chr19 13048317 13048327 SP1 JASPAR yes 13049392 1065 70807141
chr19 13048318 13048322 LFA1 TRANSFAC yes 13049392 1070 70807142
chr19 13048329 13048342 SMAD2 JASPAR yes 13049392 1050 70807143
chr19 13048336 13048346 MAX JASPAR yes 13049392 1046 70807144
chr19 13048336 13048347 USF1 JASPAR yes 13049392 1045 70807145
chr19 13048336 13048347 USF2 JASPAR yes 13049392 1045 70807146
chr19 13048336 13048348 HES7 JASPAR yes 13049392 1044 70807147
chr19 13048337 13048347 BHLHE40 JASPAR yes 13049392 1045 70807148
chr19 13048337 13048347 BHLHE41 JASPAR yes 13049392 1045 70807149
chr19 13048337 13048347 HEY1 JASPAR yes 13049392 1045 70807150
chr19 13048337 13048347 HEY2 JASPAR yes 13049392 1045 70807151
chr19 13048337 13048347 MLXIPL JASPAR yes 13049392 1045 70807152
chr19 13048337 13048347 MLX JASPAR yes 13049392 1045 70807153
chr19 13048337 13048347 MNT JASPAR yes 13049392 1045 70807154
chr19 13048337 13048347 TFE3 JASPAR yes 13049392 1045 70807155
chr19 13048337 13048347 TFEB JASPAR yes 13049392 1045 70807156
chr19 13048337 13048347 TFEC JASPAR yes 13049392 1045 70807157
chr19 13048337 13048348 USF2 JASPAR yes 13049392 1044 70807158
chr19 13048338 13048348 MAX JASPAR yes 13049392 1044 70807159
chr19 13048339 13048344 MYC TRANSFAC yes 13049392 1048 70807160
chr19 13048339 13048344 USF1 TRANSFAC yes 13049392 1048 70807161
chr19 13048339 13048344 USF2 TRANSFAC yes 13049392 1048 70807162
chr19 13048343 13048354 TFAP2C JASPAR yes 13049392 1038 70807163
chr19 13048359 13048374 HSF1 JASPAR yes 13049392 1018 70807164
chr19 13048360 13048373 HSF1 JASPAR yes 13049392 1019 70807165
chr19 13048360 13048373 HSF4 JASPAR yes 13049392 1019 70807166
chr19 13048369 13048389 RREB1 JASPAR yes 13049392 1003 70807167
chr19 13048373 13048388 NR2C2 JASPAR yes 13049392 1004 70807168
chr19 13048380 13048390 SP1 JASPAR yes 13049392 1002 70807169
chr19 13048381 13048391 SP1 JASPAR yes 13049392 1001 70807170
chr19 13048384 13048389 SP1 TRANSFAC yes 13049392 1003 70807171
chr19 13048388 13048392 H4TF2 TRANSFAC yes 13049392 1000 70807172
chr19 13048421 13048433 TAL1 JASPAR yes 13049392 959 70807173
chr19 13048437 13048448 E2F6 JASPAR yes 13049392 944 70807174
chr19 13048444 13048450 MZF1 JASPAR yes 13049392 942 70807175
chr19 13048447 13050609 POLR2A UCSC Txn Factor no Conserved 13049392 945 108387071
chr19 13048455 13048467 INSM1 JASPAR yes 13049392 925 70807176
chr19 13048455 13048470 NR2C2 JASPAR yes 13049392 922 70807177
chr19 13048482 13048492 BARHL2 JASPAR yes 13049392 900 70807178
chr19 13048485 13048495 HOXB13 JASPAR yes 13049392 897 70807179
chr19 13048485 13048495 HOXD13 JASPAR yes 13049392 897 70807180
chr19 13048485 13048496 HOXA10 JASPAR yes 13049392 896 70807181
chr19 13048486 13048496 ALX3 JASPAR yes 13049392 896 70807182
chr19 13048486 13048496 GSX2 JASPAR yes 13049392 896 70807183
chr19 13048486 13048496 MNX1 JASPAR yes 13049392 896 70807184
chr19 13048487 13048495 BARX1 JASPAR yes 13049392 897 70807185
chr19 13048487 13048495 BSX JASPAR yes 13049392 897 70807186
chr19 13048487 13048495 ISL2 JASPAR yes 13049392 897 70807187
chr19 13048487 13048495 LMX1B JASPAR yes 13049392 897 70807188
chr19 13048487 13048495 MSX1 JASPAR yes 13049392 897 70807189
chr19 13048487 13048495 MSX2 JASPAR yes 13049392 897 70807190
chr19 13048490 13048501 CEBPA JASPAR yes 13049392 891 70807191
chr19 13048507 13048519 E2F8 JASPAR yes 13049392 873 70807192
chr19 13048512 13048533 REST JASPAR yes 13049392 859 70807193
chr19 13048513 13048532 REST JASPAR yes 13049392 860 70807194
chr19 13048515 13048527 ZBTB7C JASPAR yes 13049392 865 70807195
chr19 13048515 13048530 RUNX2 JASPAR yes 13049392 862 70807196
chr19 13048516 13048526 RUNX3 JASPAR yes 13049392 866 70807197
chr19 13048528 13048540 ZBTB7B JASPAR yes 13049392 852 70807198
chr19 13048528 13048540 ZBTB7C JASPAR yes 13049392 852 70807199
chr19 13048539 13048543 YY1 TRANSFAC yes 13049392 849 70807200
chr19 13048547 13048564 RXRA JASPAR yes 13049392 828 70807201
chr19 13048547 13048568 ZNF263 JASPAR yes 13049392 824 70807202
chr19 13048553 13048560 CEBPA TRANSFAC yes 13049392 832 70807203
chr19 13048556 13048570 PLAG1 JASPAR yes 13049392 822 70807204
chr19 13048556 13048571 NR2C2 JASPAR yes 13049392 821 70807205
chr19 13048557 13048571 RXRB JASPAR yes 13049392 821 70807206
chr19 13048566 13048571 SP1 TRANSFAC yes 13049392 821 70807207
chr19 13048587 13048590 MYB TRANSFAC yes 13049392 802 70807208
chr19 13048592 13048596 NFE TRANSFAC yes 13049392 796 70807209
chr19 13048593 13048598 GATA2 JASPAR yes 13049392 794 70807210
chr19 13048595 13048601 MZF1 JASPAR yes 13049392 791 70807211
chr19 13048602 13049038 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13049392 354 108387072
chr19 13048629 13048637 EHF JASPAR yes 13049392 755 70807212
chr19 13048635 13049165 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 13049392 227 108387073
chr19 13048642 13049158 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 13049392 234 108387074
chr19 13048674 13048678 YY1 TRANSFAC yes 13049392 714 70807213
SNPs associated with CALR[ENSG00000179218.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 13007458 rs11085825 C T 41934 Esophagus 0.000189941 5447249
chr19 13032277 rs397952645 G GACTAC 17115 Esophagus 0.00721042 5447402
chr19 13032851 rs7508225 A G 16541 Esophagus 0.00297253 5447412
chr19 13062663 rs2974755 C T 7360 Heart 0.104293 5447591
chr19 13076186 rs11668444 T G 20883 Pancreas 0.0872736 5447652
chr19 13784549 rs149836722 C A 729246 Breast 0.269066 5450823
chr19 12957650 rs117758012 C T 91742 Spleen 0.00810146 5447131
chr19 13056557 rs2974752 G A 1254 Thyroid 0.0152645 5447528
chr19 13032302 rs397952646 T TG 17090 Lung 6.93844e-05 5447405
chr19 12905887 rs10423224 T C 143505 Stomach 0.217366 5446904
chr19 12633014 rs72999884 C A,G,T 416378 Adrenal 0.00523104 5445754
Details of CALR[ENSG00000179218.9]
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Genomic Location chr19:13049392-13055303[+]
TSS 13049392
Gene Name CALR
Ensembl ID ENSG00000179218.9
ENTREZID 811
Uniprot
V9HW88
P27797
Protein Name
isoform CRA_b
Calreticulin
Calreticulin
Expression levels of CALR[ENSG00000179218.9]
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