EnhancerDB
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Enhancers that regulate TRMT1[ENSG00000104907.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 13123441 13132975 enh17928 13228381 95406
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Esophagus Bone (Osteoblast) Placenta Muscle (Myoblast) Heart
chr19 13129050 13129163 vista28673 13228381 99218
VISTA
chr19 13133010 13133371 vista28674 13228381 95010
VISTA
chr19 13137197 13137461 vista28675 13228381 90920
VISTA
chr19 13138013 13138252 vista28676 13228381 90129
VISTA
chr19 13138760 13157647 enh17929 13228381 70734
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13140737 13141121 vista28677 13228381 87260
VISTA
chr19 13143095 13143350 vista28678 13228381 85031
VISTA
chr19 13144758 13144905 vista28679 13228381 83476
VISTA
chr19 13147424 13147812 vista28680 13228381 80569
VISTA
chr19 13148637 13149083 vista28681 13228381 79298
VISTA
chr19 13153458 13153528 vista28682 13228381 74853
VISTA
chr19 13155029 13155515 vista28683 13228381 72866
VISTA
chr19 13160145 13191995 enh17930 13228381 36386
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
chr19 13163511 13167355 vista791 13228381 61026
VISTA
chr19 13164647 13164970 vista28684 13228381 63411
VISTA
chr19 13166882 13167358 vista28685 13228381 61023
VISTA
chr19 13171487 13171654 vista28686 13228381 56727
VISTA
chr19 13180372 13180812 vista28687 13228381 47569
VISTA
chr19 13181358 13181806 vista28688 13228381 46575
VISTA
chr19 13188264 13188490 vista28689 13228381 39891
VISTA
chr19 13197924 13209975 enh5015 13228381 18406
Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Stomach Blood (Karpas-422) Muscle (Myotube) Uterus Heart
chr19 13202124 13202424 vista28690 13228381 25957
VISTA
chr19 13231642 13232105 vista28691 13228381 3261
VISTA
chr19 13232387 13232613 vista28692 13228381 4006
VISTA
chr19 13232805 13233031 vista28693 13228381 4424
VISTA
chr19 13233224 13233603 vista28694 13228381 4843
VISTA
chr19 13235963 13245781 enh32891 13228381 7582
Liver (HepG2) Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Blood (T-cell) Stomach
chr19 13238145 13238217 vista28695 13228381 9764
VISTA
chr19 13262107 13262928 vista28696 13228381 33726
VISTA
chr19 13265805 13289518 enh17931 13228381 37424
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13266326 13267156 vista28697 13228381 37945
VISTA
chr19 13267779 13268208 vista28698 13228381 39398
VISTA
chr19 13273540 13274187 vista28699 13228381 45159
VISTA
chr19 13274586 13275096 vista28700 13228381 46205
VISTA
chr19 13275397 13275802 vista28701 13228381 47016
VISTA
chr19 13278382 13278991 vista28702 13228381 50001
VISTA
chr19 13290515 13294935 enh48169 13228381 62134
Prostate (RWPE1) Blood (T-cell) Lung Blood (OCI-LY7) Muscle (A673) Spleen Thymus Heart
chr19 13298545 13308911 enh17932 13228381 70164
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Stomach Placenta Colon (HCT116) Blood (T-cell) Epithelial (MCF-7)
chr19 13324184 13324516 vista28703 13228381 95803
VISTA
Transcript facotrs that regulate TRMT1[ENSG00000104907.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 13231061 13232142 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2680 108388771
chr19 13231157 13231982 ZNF274 GTRD no Cervix (HeLa-S3) 13228381 2776 108388772
chr19 13231166 13231988 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2785 108388773
chr19 13231195 13232034 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2814 108388774
chr19 13231200 13231965 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2819 108388775
chr19 13231210 13232154 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2829 108388776
chr19 13231246 13232051 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2865 108388777
chr19 13231246 13232203 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2865 108388778
chr19 13231331 13231664 ZNF274 GTRD no Bone Marrow (K562) 13228381 2950 108388779
chr19 13231355 13231778 ZBTB33 GTRD no Lung (A549) 13228381 2974 108388780
chr19 13231359 13231750 ZNF143 GTRD no Epithelial (MCF-7) 13228381 2978 108388781
chr19 13231371 13231654 ZBTB33 GTRD no Lung (A549) 13228381 2990 108388782
chr19 13231371 13232016 ZNF274 GTRD no Cervix (HeLa-S3) 13228381 2990 108388783
chr19 13231404 13231649 ZNF274 GTRD no Bone Marrow (K562) 13228381 3023 108388784
chr19 13231425 13232020 ZNF274 GTRD no Bone Marrow (K562) 13228381 3044 108388785
chr19 13231503 13232201 ZNF274 GTRD no Cervix (HeLa-S3) 13228381 3122 108388786
chr19 13231533 13231768 ZBTB33 GTRD no Lung (A549) 13228381 3152 108388787
chr19 13231558 13231854 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 13228381 3177 108388788
chr19 13231610 13231866 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 13228381 3229 108388789
chr19 13231660 13232088 ZNF143 GTRD no Epithelial (MCF-7) 13228381 3279 108388790
chr19 13231669 13231672 MYB TRANSFAC yes 13228381 3288 70808536
chr19 13231712 13231716 LFA1 TRANSFAC yes 13228381 3331 70808537
chr19 13231718 13231731 SCRT2 JASPAR yes 13228381 3337 70808538
chr19 13231718 13231733 SCRT1 JASPAR yes 13228381 3337 70808539
chr19 13231725 13232150 ZNF143 GTRD no Epithelial (MCF-7) 13228381 3344 108388791
chr19 13231730 13231744 ZIC1 JASPAR yes 13228381 3349 70808540
chr19 13231730 13231745 ZIC4 JASPAR yes 13228381 3349 70808541
chr19 13231744 13231759 STAT2 JASPAR yes 13228381 3363 70808542
chr19 13231751 13231755 YY1 TRANSFAC yes 13228381 3370 70808543
chr19 13231753 13231772 REST JASPAR yes 13228381 3372 70808544
chr19 13231770 13231784 ZIC1 JASPAR yes 13228381 3389 70808545
chr19 13231770 13231785 ZIC3 JASPAR yes 13228381 3389 70808546
chr19 13231770 13231785 ZIC4 JASPAR yes 13228381 3389 70808547
chr19 13231774 13231788 GLIS2 JASPAR yes 13228381 3393 70808548
chr19 13231781 13231791 SP1 JASPAR yes 13228381 3400 70808549
chr19 13231787 13231792 TFAP2A TRANSFAC yes 13228381 3406 70808550
chr19 13231787 13231793 MZF1 JASPAR yes 13228381 3406 70808551
chr19 13231789 13231794 ETS2 TRANSFAC yes 13228381 3408 70808552
chr19 13231805 13231808 MYB TRANSFAC yes 13228381 3424 70808553
chr19 13231874 13231887 ELF3 JASPAR yes 13228381 3493 70808554
chr19 13231879 13231894 FOXA1 JASPAR yes 13228381 3498 70808555
chr19 13231880 13231895 FOXP1 JASPAR yes 13228381 3499 70808556
chr19 13231881 13231892 FOXP2 JASPAR yes 13228381 3500 70808557
chr19 13231881 13231893 FOXC2 JASPAR yes 13228381 3500 70808558
chr19 13231882 13231890 FOXD1 JASPAR yes 13228381 3501 70808559
chr19 13231882 13231890 FOXG1 JASPAR yes 13228381 3501 70808560
chr19 13231882 13231890 FOXO3 JASPAR yes 13228381 3501 70808561
chr19 13231882 13231893 FOXB1 JASPAR yes 13228381 3501 70808562
chr19 13231883 13231890 FOXD2 JASPAR yes 13228381 3502 70808563
chr19 13231883 13231890 FOXI1 JASPAR yes 13228381 3502 70808564
chr19 13231883 13231890 FOXL1 JASPAR yes 13228381 3502 70808565
chr19 13231883 13231890 FOXO4 JASPAR yes 13228381 3502 70808566
chr19 13231883 13231890 FOXO6 JASPAR yes 13228381 3502 70808567
chr19 13231883 13231890 FOXP3 JASPAR yes 13228381 3502 70808568
chr19 13231883 13231891 FOXO3 JASPAR yes 13228381 3502 70808569
chr19 13231883 13231894 FOXA1 JASPAR yes 13228381 3502 70808570
chr19 13231888 13231894 SOX10 JASPAR yes 13228381 3507 70808571
chr19 13231905 13231919 BATF3 JASPAR yes 13228381 3524 70808572
chr19 13231911 13231921 MEOX2 JASPAR yes 13228381 3530 70808573
chr19 13231914 13231918 YY1 TRANSFAC yes 13228381 3533 70808574
chr19 13231921 13231934 TFAP2A JASPAR yes 13228381 3540 70808575
chr19 13231921 13231938 ZNF410 JASPAR yes 13228381 3540 70808576
chr19 13231929 13231939 SP1 JASPAR yes 13228381 3548 70808577
chr19 13231931 13231941 MZF1 JASPAR yes 13228381 3550 70808578
chr19 13231934 13231939 TFAP2A TRANSFAC yes 13228381 3553 70808579
chr19 13231934 13231940 MZF1 JASPAR yes 13228381 3553 70808580
chr19 13231935 13231955 RREB1 JASPAR yes 13228381 3554 70808581
chr19 13231951 13231964 ELF1 JASPAR yes 13228381 3570 70808582
chr19 13231952 13231962 ELK1 JASPAR yes 13228381 3571 70808583
chr19 13231952 13231964 EHF JASPAR yes 13228381 3571 70808584
chr19 13231952 13231964 ELF1 JASPAR yes 13228381 3571 70808585
chr19 13231952 13231964 ELF4 JASPAR yes 13228381 3571 70808586
chr19 13231952 13231965 ELF3 JASPAR yes 13228381 3571 70808587
chr19 13231953 13231964 ELF5 JASPAR yes 13228381 3572 70808588
chr19 13231954 13231963 ELK4 JASPAR yes 13228381 3573 70808589
chr19 13231954 13231964 ELK1 JASPAR yes 13228381 3573 70808590
chr19 13231954 13231964 ELK3 JASPAR yes 13228381 3573 70808591
chr19 13231954 13231964 ERF JASPAR yes 13228381 3573 70808592
chr19 13231954 13231964 ERG JASPAR yes 13228381 3573 70808593
chr19 13231954 13231964 ETS1 JASPAR yes 13228381 3573 70808594
chr19 13231954 13231964 ETV1 JASPAR yes 13228381 3573 70808595
chr19 13231954 13231964 ETV3 JASPAR yes 13228381 3573 70808596
chr19 13231954 13231964 ETV4 JASPAR yes 13228381 3573 70808597
chr19 13231954 13231964 ETV5 JASPAR yes 13228381 3573 70808598
chr19 13231954 13231964 ETV6 JASPAR yes 13228381 3573 70808599
chr19 13231954 13231964 FEV JASPAR yes 13228381 3573 70808600
chr19 13231954 13231964 FLI1 JASPAR yes 13228381 3573 70808601
chr19 13231954 13231964 GABPA JASPAR yes 13228381 3573 70808602
chr19 13231954 13231965 ELK4 JASPAR yes 13228381 3573 70808603
chr19 13231954 13231965 FLI1 JASPAR yes 13228381 3573 70808604
chr19 13231955 13231963 FEV JASPAR yes 13228381 3574 70808605
chr19 13231956 13231962 ETS1 JASPAR yes 13228381 3575 70808606
chr19 13231956 13231962 SPI1 JASPAR yes 13228381 3575 70808607
chr19 13232002 13232022 RREB1 JASPAR yes 13228381 3621 70808608
chr19 13232004 13232024 RREB1 JASPAR yes 13228381 3623 70808609
chr19 13232005 13232010 SP1 TRANSFAC yes 13228381 3624 70808610
chr19 13232018 13232032 PLAG1 JASPAR yes 13228381 3637 70808611
chr19 13232020 13232037 RARA JASPAR yes 13228381 3639 70808612
chr19 13232026 13232032 MAZ TRANSFAC yes 13228381 3645 70808613
chr19 13232032 13232036 ESR1 TRANSFAC yes 13228381 3651 70808614
chr19 13232046 13232057 EBF1 JASPAR yes 13228381 3665 70808615
chr19 13232392 13232407 TFAP2A JASPAR yes 13228381 4011 70808616
chr19 13232392 13232407 TFAP2C JASPAR yes 13228381 4011 70808617
chr19 13232394 13232403 TFAP2A JASPAR yes 13228381 4013 70808618
chr19 13232443 13232456 DUXA JASPAR yes 13228381 4062 70808619
chr19 13232445 13232450 H4TF1 TRANSFAC yes 13228381 4064 70808620
chr19 13232445 13232458 ATF4 JASPAR yes 13228381 4064 70808621
chr19 13232501 13232506 SP1 TRANSFAC yes 13228381 4120 70808622
chr19 13232505 13232509 LFA1 TRANSFAC yes 13228381 4124 70808623
chr19 13232529 13232540 FOSL2 JASPAR yes 13228381 4148 70808624
chr19 13232532 13232545 TFAP2A JASPAR yes 13228381 4151 70808625
chr19 13232544 13232551 NFATC2 JASPAR yes 13228381 4163 70808626
chr19 13232545 13232553 FOXO3 JASPAR yes 13228381 4164 70808627
chr19 13232547 13232561 JUN JASPAR yes 13228381 4166 70808628
chr19 13232549 13232560 BATF JASPAR yes 13228381 4168 70808629
chr19 13232549 13232565 SOX8 JASPAR yes 13228381 4168 70808630
chr19 13232550 13232561 FOSL2 JASPAR yes 13228381 4169 70808631
chr19 13232550 13232561 JUNB JASPAR yes 13228381 4169 70808632
chr19 13232551 13232562 FOS JASPAR yes 13228381 4170 70808633
chr19 13232551 13232562 FOSL1 JASPAR yes 13228381 4170 70808634
chr19 13232551 13232562 JUND JASPAR yes 13228381 4170 70808635
chr19 13232551 13232562 NFE2 JASPAR yes 13228381 4170 70808636
chr19 13232552 13232561 JDP2 JASPAR yes 13228381 4171 70808637
chr19 13232552 13232563 JUNB JASPAR yes 13228381 4171 70808638
chr19 13232552 13232566 JUN JASPAR yes 13228381 4171 70808639
chr19 13232553 13232560 JUN TRANSFAC yes 13228381 4172 70808640
chr19 13232553 13232564 BATF JASPAR yes 13228381 4172 70808641
chr19 13232835 13232849 EBF1 JASPAR yes 13228381 4454 70808642
chr19 13232836 13232847 EBF1 JASPAR yes 13228381 4455 70808643
chr19 13232865 13232870 SP1 TRANSFAC yes 13228381 4484 70808644
chr19 13232868 13232873 SP1 TRANSFAC yes 13228381 4487 70808645
chr19 13232868 13232875 SP1 TRANSFAC yes 13228381 4487 70808646
chr19 13232877 13232885 TBX15 JASPAR yes 13228381 4496 70808647
chr19 13232878 13232883 SP1 TRANSFAC yes 13228381 4497 70808648
chr19 13232880 13233057 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13228381 4499 108388792
chr19 13232900 13232904 YY1 TRANSFAC yes 13228381 4519 70808649
chr19 13232905 13232910 SP1 TRANSFAC yes 13228381 4524 70808650
chr19 13232906 13232916 SREBF1 JASPAR yes 13228381 4525 70808651
chr19 13232906 13232916 SREBF2 JASPAR yes 13228381 4525 70808652
chr19 13232934 13232948 CREB3 JASPAR yes 13228381 4553 70808653
chr19 13232934 13232948 CREB3L1 JASPAR yes 13228381 4553 70808654
chr19 13232935 13232949 XBP1 JASPAR yes 13228381 4554 70808655
chr19 13232937 13232942 ATF1 TRANSFAC yes 13228381 4556 70808656
chr19 13232944 13232964 RREB1 JASPAR yes 13228381 4563 70808657
chr19 13232955 13232974 REST JASPAR yes 13228381 4574 70808658
chr19 13232957 13232972 RUNX2 JASPAR yes 13228381 4576 70808659
chr19 13232961 13232971 RUNX3 JASPAR yes 13228381 4580 70808660
chr19 13232963 13232978 RUNX2 JASPAR yes 13228381 4582 70808661
chr19 13232967 13232977 RUNX3 JASPAR yes 13228381 4586 70808662
chr19 13232972 13232976 ESR1 TRANSFAC yes 13228381 4591 70808663
chr19 13232992 13233002 TFEC JASPAR yes 13228381 4611 70808664
chr19 13233154 13233418 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13228381 4773 108388793
chr19 13233224 13233230 GATA1 TRANSFAC yes 13228381 4843 70808665
chr19 13233224 13233232 GATA5 JASPAR yes 13228381 4843 70808666
chr19 13233235 13233245 NKX2-3 JASPAR yes 13228381 4854 70808667
chr19 13233239 13233248 HIC2 JASPAR yes 13228381 4858 70808668
chr19 13233242 13233246 LFA1 TRANSFAC yes 13228381 4861 70808669
chr19 13233265 13233277 NHLH1 JASPAR yes 13228381 4884 70808670
chr19 13233300 13233305 TFAP2A TRANSFAC yes 13228381 4919 70808671
chr19 13233300 13233306 MZF1 JASPAR yes 13228381 4919 70808672
chr19 13233311 13233316 TFAP2A TRANSFAC yes 13228381 4930 70808673
chr19 13233311 13233317 MZF1 JASPAR yes 13228381 4930 70808674
chr19 13233317 13233321 YY1 TRANSFAC yes 13228381 4936 70808675
chr19 13233333 13233344 TFAP2A JASPAR yes 13228381 4952 70808676
chr19 13233333 13233345 TFAP2A JASPAR yes 13228381 4952 70808677
chr19 13233333 13233346 TFAP2A JASPAR yes 13228381 4952 70808678
chr19 13233334 13233343 TFAP2A JASPAR yes 13228381 4953 70808679
chr19 13233335 13233355 RREB1 JASPAR yes 13228381 4954 70808680
chr19 13233336 13233346 SP1 JASPAR yes 13228381 4955 70808681
chr19 13233336 13233346 ZNF740 JASPAR yes 13228381 4955 70808682
chr19 13233337 13233347 SP1 JASPAR yes 13228381 4956 70808683
chr19 13233337 13233347 ZNF740 JASPAR yes 13228381 4956 70808684
chr19 13233337 13233357 RREB1 JASPAR yes 13228381 4956 70808685
chr19 13233338 13233348 SP1 JASPAR yes 13228381 4957 70808686
chr19 13233338 13233348 ZNF740 JASPAR yes 13228381 4957 70808687
chr19 13233339 13233349 SP1 JASPAR yes 13228381 4958 70808688
chr19 13233339 13233349 ZNF740 JASPAR yes 13228381 4958 70808689
chr19 13233340 13233350 SP1 JASPAR yes 13228381 4959 70808690
chr19 13233340 13233350 ZNF740 JASPAR yes 13228381 4959 70808691
chr19 13233340 13233360 RREB1 JASPAR yes 13228381 4959 70808692
chr19 13233341 13233351 SP1 JASPAR yes 13228381 4960 70808693
chr19 13233341 13233351 ZNF740 JASPAR yes 13228381 4960 70808694
chr19 13233341 13233561 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13228381 4960 108388794
chr19 13233342 13233352 ZNF740 JASPAR yes 13228381 4961 70808695
chr19 13233343 13233353 SP1 JASPAR yes 13228381 4962 70808696
chr19 13233343 13233353 ZNF740 JASPAR yes 13228381 4962 70808697
chr19 13233355 13233374 CTCF JASPAR yes 13228381 4974 70808698
chr19 13233369 13233383 RXRB JASPAR yes 13228381 4988 70808699
chr19 13233369 13233383 RXRG JASPAR yes 13228381 4988 70808700
chr19 13233369 13233566 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13228381 4988 108388795
chr19 13233370 13233380 HOXB13 JASPAR yes 13228381 4989 70808701
SNPs associated with TRMT1[ENSG00000104907.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 13477618 rs117933528 C G 249237 Esophagus 0.129186 5449859
chr19 12399733 rs4297803 G A 815983 Heart 0.201682 5445334
chr19 13908134 rs181371650 C T 679753 Stomach 0.362872 5451758
Details of TRMT1[ENSG00000104907.8]
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Genomic Location chr19:13215716-13228381[-]
TSS 13228381
Gene Name TRMT1
Ensembl ID ENSG00000104907.8
ENTREZID 55621
Uniprot
Q9NXH9
A8K8L2
A0A024R7I5
Protein Name
Mitochondrial tRNA-specific 2-thiouridylase 1
TRM1 tRNA methyltransferase 1 homolog
tRNA
Expression levels of TRMT1[ENSG00000104907.8]
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