EnhancerDB
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Enhancers that regulate LYL1[ENSG00000104903.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 13107426 13115175 enh32890 13213975 98800
Astrocyte Bone (Osteoblast) Lung Pancreas Stomach
chr19 13115737 13122542 enh88371 13213975 91433
Pancreas Thyroid Prostate (RWPE1)
chr19 13123441 13132975 enh17928 13213975 81000
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Esophagus Bone (Osteoblast) Placenta Muscle (Myoblast) Heart
chr19 13123653 13124120 vista28671 13213975 89855
VISTA
chr19 13125867 13126278 vista28672 13213975 87697
VISTA
chr19 13129050 13129163 vista28673 13213975 84812
VISTA
chr19 13133010 13133371 vista28674 13213975 80604
VISTA
chr19 13137197 13137461 vista28675 13213975 76514
VISTA
chr19 13138013 13138252 vista28676 13213975 75723
VISTA
chr19 13138760 13157647 enh17929 13213975 56328
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13140737 13141121 vista28677 13213975 72854
VISTA
chr19 13143095 13143350 vista28678 13213975 70625
VISTA
chr19 13144758 13144905 vista28679 13213975 69070
VISTA
chr19 13147424 13147812 vista28680 13213975 66163
VISTA
chr19 13148637 13149083 vista28681 13213975 64892
VISTA
chr19 13153458 13153528 vista28682 13213975 60447
VISTA
chr19 13155029 13155515 vista28683 13213975 58460
VISTA
chr19 13160145 13191995 enh17930 13213975 21980
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
chr19 13163511 13167355 vista791 13213975 46620
VISTA
chr19 13164647 13164970 vista28684 13213975 49005
VISTA
chr19 13166882 13167358 vista28685 13213975 46617
VISTA
chr19 13171487 13171654 vista28686 13213975 42321
VISTA
chr19 13180372 13180812 vista28687 13213975 33163
VISTA
chr19 13181358 13181806 vista28688 13213975 32169
VISTA
chr19 13188264 13188490 vista28689 13213975 25485
VISTA
chr19 13197924 13209975 enh5015 13213975 4000
Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Stomach Blood (Karpas-422) Muscle (Myotube) Uterus Heart
chr19 13202124 13202424 vista28690 13213975 11551
VISTA
chr19 13231642 13232105 vista28691 13213975 17667
VISTA
chr19 13232387 13232613 vista28692 13213975 18412
VISTA
chr19 13232805 13233031 vista28693 13213975 18830
VISTA
chr19 13233224 13233603 vista28694 13213975 19249
VISTA
chr19 13235963 13245781 enh32891 13213975 21988
Liver (HepG2) Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Blood (T-cell) Stomach
chr19 13238145 13238217 vista28695 13213975 24170
VISTA
chr19 13262107 13262928 vista28696 13213975 48132
VISTA
chr19 13265805 13289518 enh17931 13213975 51830
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13266326 13267156 vista28697 13213975 52351
VISTA
chr19 13267779 13268208 vista28698 13213975 53804
VISTA
chr19 13273540 13274187 vista28699 13213975 59565
VISTA
chr19 13274586 13275096 vista28700 13213975 60611
VISTA
chr19 13275397 13275802 vista28701 13213975 61422
VISTA
chr19 13278382 13278991 vista28702 13213975 64407
VISTA
chr19 13290515 13294935 enh48169 13213975 76540
Prostate (RWPE1) Blood (T-cell) Lung Blood (OCI-LY7) Muscle (A673) Spleen Thymus Heart
chr19 13298545 13308911 enh17932 13213975 84570
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Stomach Placenta Colon (HCT116) Blood (T-cell) Epithelial (MCF-7)
Transcript facotrs that regulate LYL1[ENSG00000104903.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 13208980 13208990 SP1 JASPAR yes 13213975 4985 112511223
chr19 13208980 13208990 ZNF740 JASPAR yes 13213975 4985 112511224
chr19 13208982 13208992 ZNF740 JASPAR yes 13213975 4983 112511225
chr19 13208991 13209006 FOXP1 JASPAR yes 13213975 4969 112511226
chr19 13209006 13209017 CDX2 JASPAR yes 13213975 4958 112511227
chr19 13209007 13209018 HOXA10 JASPAR yes 13213975 4957 112511228
chr19 13209008 13209017 CDX1 JASPAR yes 13213975 4958 112511229
chr19 13209018 13209031 HSF4 JASPAR yes 13213975 4944 112511230
chr19 13209036 13209040 H1TF2 TRANSFAC yes 13213975 4935 112511231
chr19 13209036 13209040 NFE TRANSFAC yes 13213975 4935 112511232
chr19 13209036 13209040 SRF TRANSFAC yes 13213975 4935 112511233
chr19 13209042 13209057 TFAP2A JASPAR yes 13213975 4918 112511234
chr19 13209045 13209058 TFAP2A JASPAR yes 13213975 4917 112511235
chr19 13209045 13209058 TFAP2B JASPAR yes 13213975 4917 112511236
chr19 13209045 13209058 TFAP2C JASPAR yes 13213975 4917 112511237
chr19 13209046 13209055 TFAP2A JASPAR yes 13213975 4920 112511238
chr19 13209052 13209063 NFKB1 JASPAR yes 13213975 4912 112511239
chr19 13209053 13209057 LFA1 TRANSFAC yes 13213975 4918 112511240
chr19 13209059 13209067 SP1 TRANSFAC yes 13213975 4908 112511241
chr19 13209064 13209070 SP1 TRANSFAC yes 13213975 4905 112511242
chr19 13209064 13209074 SP1 JASPAR yes 13213975 4901 112511243
chr19 13209075 13209095 RREB1 JASPAR yes 13213975 4880 112511244
chr19 13209076 13209086 ZNF740 JASPAR yes 13213975 4889 112511245
chr19 13209077 13209087 ZNF740 JASPAR yes 13213975 4888 112511246
chr19 13209077 13209097 RREB1 JASPAR yes 13213975 4878 112511247
chr19 13209078 13209098 RREB1 JASPAR yes 13213975 4877 112511248
chr19 13209078 13209099 ZNF263 JASPAR yes 13213975 4876 112511249
chr19 13209079 13209099 RREB1 JASPAR yes 13213975 4876 112511250
chr19 13209080 13209100 RREB1 JASPAR yes 13213975 4875 112511251
chr19 13209083 13209097 PLAG1 JASPAR yes 13213975 4878 112511252
chr19 13209084 13209094 SP1 JASPAR yes 13213975 4881 112511253
chr19 13209085 13209095 SP1 JASPAR yes 13213975 4880 112511254
chr19 13209089 13209099 SP1 JASPAR yes 13213975 4876 112511255
chr19 13209090 13209105 TFAP2C JASPAR yes 13213975 4870 112511256
chr19 13209099 13209110 NFKB1 JASPAR yes 13213975 4865 112511257
chr19 13209105 13209115 SP1 JASPAR yes 13213975 4860 112511258
chr19 13209106 13209116 SP1 JASPAR yes 13213975 4859 112511259
chr19 13209107 13209113 SP1 TRANSFAC yes 13213975 4862 112511260
chr19 13209107 13209117 SP1 JASPAR yes 13213975 4858 112511261
chr19 13209108 13209118 SP1 JASPAR yes 13213975 4857 112511262
chr19 13209120 13209140 TP63 JASPAR yes 13213975 4835 112511263
chr19 13209138 13209152 PLAG1 JASPAR yes 13213975 4823 112511264
chr19 13209148 13209154 SP1 TRANSFAC yes 13213975 4821 112511265
chr19 13209178 13209189 GCM1 JASPAR yes 13213975 4786 112511266
chr19 13209180 13209201 REST JASPAR yes 13213975 4774 112511267
chr19 13209201 13209209 SMAD4 TRANSFAC yes 13213975 4766 112511268
chr19 13209203 13209208 SP1 TRANSFAC yes 13213975 4767 112511269
chr19 13209216 13209228 GRHL1 JASPAR yes 13213975 4747 112511270
chr19 13209258 13209263 GATA1 TRANSFAC yes 13213975 4712 112511271
chr19 13209261 13209276 MEF2A JASPAR yes 13213975 4699 112511272
chr19 13209262 13209277 MEF2A JASPAR yes 13213975 4698 112511273
chr19 13209263 13209275 MEF2A JASPAR yes 13213975 4700 112511274
chr19 13209263 13209275 MEF2B JASPAR yes 13213975 4700 112511275
chr19 13209263 13209275 MEF2D JASPAR yes 13213975 4700 112511276
chr19 13209264 13209274 MEF2A JASPAR yes 13213975 4701 112511277
chr19 13209265 13209273 FOXL1 JASPAR yes 13213975 4702 112511278
chr19 13209276 13209285 VENTX JASPAR yes 13213975 4690 112511279
chr19 13209277 13209287 PAX3 JASPAR yes 13213975 4688 112511280
chr19 13209277 13209287 PAX7 JASPAR yes 13213975 4688 112511281
chr19 13209292 13209313 ZNF263 JASPAR yes 13213975 4662 112511282
chr19 13209294 13209304 MZF1 JASPAR yes 13213975 4671 112511283
chr19 13209295 13209316 ZNF263 JASPAR yes 13213975 4659 112511284
chr19 13209297 13209311 PLAG1 JASPAR yes 13213975 4664 112511285
chr19 13209298 13209319 ZNF263 JASPAR yes 13213975 4656 112511286
chr19 13209304 13209325 ZNF263 JASPAR yes 13213975 4650 112511287
chr19 13209306 13209316 MZF1 JASPAR yes 13213975 4659 112511288
chr19 13209307 13209328 ZNF263 JASPAR yes 13213975 4647 112511289
chr19 13209309 13209315 SP1 TRANSFAC yes 13213975 4660 112511290
chr19 13209309 13209319 SP1 JASPAR yes 13213975 4656 112511291
chr19 13209310 13209331 ZNF263 JASPAR yes 13213975 4644 112511292
chr19 13209313 13209334 ZNF263 JASPAR yes 13213975 4641 112511293
chr19 13209321 13209331 SP1 JASPAR yes 13213975 4644 112511294
chr19 13209328 13209349 ZNF263 JASPAR yes 13213975 4626 112511295
chr19 13209341 13209362 ZNF263 JASPAR yes 13213975 4613 112511296
chr19 13209342 13209363 ZNF263 JASPAR yes 13213975 4612 112511297
chr19 13209343 13209364 ZNF263 JASPAR yes 13213975 4611 112511298
chr19 13209346 13209367 ZNF263 JASPAR yes 13213975 4608 112511299
chr19 13209349 13209370 ZNF263 JASPAR yes 13213975 4605 112511300
chr19 13209356 13209371 NR2C2 JASPAR yes 13213975 4604 112511301
chr19 13209394 13209409 SOX21 JASPAR yes 13213975 4566 112511302
chr19 13209408 13209423 IRF9 JASPAR yes 13213975 4552 112511303
chr19 13209409 13209413 NFE TRANSFAC yes 13213975 4562 112511304
chr19 13209410 13209431 IRF1 JASPAR yes 13213975 4544 112511305
chr19 13209411 13209426 FOXP1 JASPAR yes 13213975 4549 112511306
chr19 13209412 13209427 STAT2 JASPAR yes 13213975 4548 112511307
chr19 13209413 13209427 STAT1 JASPAR yes 13213975 4548 112511308
chr19 13209414 13209426 IRF1 JASPAR yes 13213975 4549 112511309
chr19 13209414 13209428 IRF7 JASPAR yes 13213975 4547 112511310
chr19 13209416 13209422 TCF4 TRANSFAC yes 13213975 4553 112511311
chr19 13209416 13209431 FOXP1 JASPAR yes 13213975 4544 112511312
chr19 13209417 13209426 SRY JASPAR yes 13213975 4549 112511313
chr19 13209417 13209428 FOXP2 JASPAR yes 13213975 4547 112511314
chr19 13209419 13209436 BCL6B JASPAR yes 13213975 4539 112511315
chr19 13209445 13209453 TEAD3 JASPAR yes 13213975 4522 112511316
chr19 13209473 13209484 E2F6 JASPAR yes 13213975 4491 112511317
chr19 13209476 13209490 PLAG1 JASPAR yes 13213975 4485 112511318
chr19 13209483 13209488 SP1 TRANSFAC yes 13213975 4487 112511319
chr19 13209483 13209489 SP1 TRANSFAC yes 13213975 4486 112511320
chr19 13209485 13209494 SP1 TRANSFAC yes 13213975 4481 112511321
chr19 13209485 13209503 SP1 TRANSFAC yes 13213975 4472 112511322
chr19 13209486 13209492 SP1 TRANSFAC yes 13213975 4483 112511323
chr19 13209486 13209496 SP1 JASPAR yes 13213975 4479 112511324
chr19 13209487 13209494 SP1 TRANSFAC yes 13213975 4481 112511325
chr19 13209488 13209493 SP1 TRANSFAC yes 13213975 4482 112511326
chr19 13209488 13209494 SP1 TRANSFAC yes 13213975 4481 112511327
chr19 13209490 13209499 SP1 TRANSFAC yes 13213975 4476 112511328
chr19 13209491 13209497 SP1 TRANSFAC yes 13213975 4478 112511329
chr19 13209491 13209501 SP1 JASPAR yes 13213975 4474 112511330
chr19 13209492 13209499 SP1 TRANSFAC yes 13213975 4476 112511331
chr19 13209493 13209498 SP1 TRANSFAC yes 13213975 4477 112511332
chr19 13209493 13209499 SP1 TRANSFAC yes 13213975 4476 112511333
chr19 13209495 13209504 SP1 TRANSFAC yes 13213975 4471 112511334
chr19 13209496 13209502 SP1 TRANSFAC yes 13213975 4473 112511335
chr19 13209496 13209506 SP1 JASPAR yes 13213975 4469 112511336
chr19 13209497 13209504 SP1 TRANSFAC yes 13213975 4471 112511337
chr19 13209498 13209503 SP1 TRANSFAC yes 13213975 4472 112511338
chr19 13209498 13209504 SP1 TRANSFAC yes 13213975 4471 112511339
chr19 13209498 13209505 SP1 TRANSFAC yes 13213975 4470 112511340
chr19 13209536 13209543 JUN TRANSFAC yes 13213975 4432 112511341
chr19 13209557 13209562 MYB TRANSFAC yes 13213975 4413 112511342
chr19 13209585 13209600 FOXP1 JASPAR yes 13213975 4375 112511343
chr19 13209586 13209607 IRF1 JASPAR yes 13213975 4368 112511344
chr19 13209591 13209606 FOXP1 JASPAR yes 13213975 4369 112511345
chr19 13209598 13209613 ZBTB33 JASPAR yes 13213975 4362 112511346
chr19 13209613 13209626 NR2F1 JASPAR yes 13213975 4349 112511347
chr19 13209628 13209631 MYB TRANSFAC yes 13213975 4344 112511348
chr19 13209628 13209647 PAX5 JASPAR yes 13213975 4328 112511349
chr19 13209631 13209648 PAX1 JASPAR yes 13213975 4327 112511350
chr19 13209631 13209648 PAX9 JASPAR yes 13213975 4327 112511351
chr19 13209654 13209668 PLAG1 JASPAR yes 13213975 4307 112511352
chr19 13209693 13209697 NFE TRANSFAC yes 13213975 4278 112511353
chr19 13209701 13209715 MTF1 JASPAR yes 13213975 4260 112511354
chr19 13209736 13209742 NFE2 TRANSFAC yes 13213975 4233 112511355
chr19 13209756 13209761 SP1 TRANSFAC yes 13213975 4214 112511356
chr19 13209756 13209770 PLAG1 JASPAR yes 13213975 4205 112511357
chr19 13209783 13209789 MZF1 JASPAR yes 13213975 4186 112511358
chr19 13209785 13209793 SP1 TRANSFAC yes 13213975 4182 112511359
chr19 13209790 13209796 SP1 TRANSFAC yes 13213975 4179 112511360
chr19 13209790 13209804 PLAG1 JASPAR yes 13213975 4171 112511361
chr19 13209798 13209813 ZIC3 JASPAR yes 13213975 4162 112511362
chr19 13209800 13209816 GLIS1 JASPAR yes 13213975 4159 112511363
chr19 13209810 13209822 INSM1 JASPAR yes 13213975 4153 112511364
chr19 13209821 13209827 ETS1 JASPAR yes 13213975 4148 112511365
chr19 13209836 13209846 NKX2-3 JASPAR yes 13213975 4129 112511366
chr19 13209844 13209848 H4TF2 TRANSFAC yes 13213975 4127 112511367
chr19 13209858 13209870 YY1 JASPAR yes 13213975 4105 112511368
chr19 13209861 13209880 RFX2 JASPAR yes 13213975 4095 112511369
chr19 13209865 13209881 RFX2 JASPAR yes 13213975 4094 112511370
chr19 13209865 13209881 RFX3 JASPAR yes 13213975 4094 112511371
chr19 13209865 13209881 RFX4 JASPAR yes 13213975 4094 112511372
chr19 13209865 13209881 RFX5 JASPAR yes 13213975 4094 112511373
chr19 13209879 13209894 TFAP2C JASPAR yes 13213975 4081 112511374
chr19 13209882 13209893 EBF1 JASPAR yes 13213975 4082 112511375
chr19 13209889 13209894 ETS2 TRANSFAC yes 13213975 4081 112511376
chr19 13209901 13209905 LFA1 TRANSFAC yes 13213975 4070 112511377
chr19 13209912 13209927 HSF1 JASPAR yes 13213975 4048 112511378
chr19 13209920 13209940 RREB1 JASPAR yes 13213975 4035 112511379
chr19 13209935 13209945 HOXA13 JASPAR yes 13213975 4030 112511380
chr19 13209945 13209956 GCM1 JASPAR yes 13213975 4019 112511381
chr19 13209950 13209964 PLAG1 JASPAR yes 13213975 4011 112511382
chr19 13209950 13209967 RARA JASPAR yes 13213975 4008 112511383
chr19 13209951 13209955 H4TF2 TRANSFAC yes 13213975 4020 112511384
chr19 13209951 13209965 EBF1 JASPAR yes 13213975 4010 112511385
chr19 13209952 13209963 EBF1 JASPAR yes 13213975 4012 112511386
chr19 13209952 13209966 GLIS2 JASPAR yes 13213975 4009 112511387
chr19 13209953 13209964 EBF1 JASPAR yes 13213975 4011 112511388
chr19 13209953 13209965 TFAP2C JASPAR yes 13213975 4010 112511389
chr19 13209956 13209968 ZBTB7B JASPAR yes 13213975 4007 112511390
chr19 13209956 13209968 ZBTB7C JASPAR yes 13213975 4007 112511391
SNPs associated with LYL1[ENSG00000104903.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 13944478 rs2594716 C T 730503 Esophagus 0.392623 5451871
chr19 12994316 rs111933865 GATTTCGAAACCAGCCTGGCCAGC G 215531 Heart 0.371136 5447155
chr19 13108536 rs116857070 G A 101311 Heart 0.0838045 5447889
chr19 14128842 rs55727212 T C 914867 Pancreas 0.220894 5453260
chr19 14115854 rs112413477 C T 901879 Breast 0.0708537 5453153
chr19 13215111 rs75951249 G A 1136 Thyroid 0.0205571 5448827
chr19 12319644 rs56176881 G A 890203 Liver 0.43198 5445258
chr19 13132494 rs1548547 A C 77353 Lung 0.052987 5448156
chr19 14053837 rs112732476 C T 839862 Stomach 0.27276 5452696
chr19 13132215 rs77569445 G T 77632 Adrenal 0.280244 5448155
Details of LYL1[ENSG00000104903.4]
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Genomic Location chr19:13209847-13213975[-]
TSS 13213975
Gene Name LYL1
Ensembl ID ENSG00000104903.4
ENTREZID 4066
Uniprot
P12980
Protein Name
Protein lyl-1
Expression levels of LYL1[ENSG00000104903.4]
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